Literature DB >> 34608865

Modelling the neural code in large populations of correlated neurons.

Sacha Sokoloski1,2, Amir Aschner3, Ruben Coen-Cagli1,3.   

Abstract

Neurons respond selectively to stimuli, and thereby define a code that associates stimuli with population response patterns. Certain correlations within population responses (noise correlations) significantly impact the information content of the code, especially in large populations. Understanding the neural code thus necessitates response models that quantify the coding properties of modelled populations, while fitting large-scale neural recordings and capturing noise correlations. In this paper, we propose a class of response model based on mixture models and exponential families. We show how to fit our models with expectation-maximization, and that they capture diverse variability and covariability in recordings of macaque primary visual cortex. We also show how they facilitate accurate Bayesian decoding, provide a closed-form expression for the Fisher information, and are compatible with theories of probabilistic population coding. Our framework could allow researchers to quantitatively validate the predictions of neural coding theories against both large-scale neural recordings and cognitive performance.
© 2021, Sokoloski et al.

Entities:  

Keywords:  bayesian modelling; neural coding; neuroscience; primary visual cortex; rhesus macaque

Mesh:

Year:  2021        PMID: 34608865      PMCID: PMC8577837          DOI: 10.7554/eLife.64615

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  77 in total

1.  The effect of noise correlations in populations of diversely tuned neurons.

Authors:  Alexander S Ecker; Philipp Berens; Andreas S Tolias; Matthias Bethge
Journal:  J Neurosci       Date:  2011-10-05       Impact factor: 6.167

2.  Model-based decoding, information estimation, and change-point detection techniques for multineuron spike trains.

Authors:  Jonathan W Pillow; Yashar Ahmadian; Liam Paninski
Journal:  Neural Comput       Date:  2010-10-21       Impact factor: 2.026

3.  Gaussian-process factor analysis for low-dimensional single-trial analysis of neural population activity.

Authors:  Byron M Yu; John P Cunningham; Gopal Santhanam; Stephen I Ryu; Krishna V Shenoy; Maneesh Sahani
Journal:  J Neurophysiol       Date:  2009-04-08       Impact factor: 2.714

Review 4.  Probabilistic interpretation of population codes.

Authors:  R S Zemel; P Dayan; A Pouget
Journal:  Neural Comput       Date:  1998-02-15       Impact factor: 2.026

Review 5.  Cracking the Neural Code for Sensory Perception by Combining Statistics, Intervention, and Behavior.

Authors:  Stefano Panzeri; Christopher D Harvey; Eugenio Piasini; Peter E Latham; Tommaso Fellin
Journal:  Neuron       Date:  2017-02-08       Impact factor: 17.173

Review 6.  Towards the design principles of neural population codes.

Authors:  Elad Schneidman
Journal:  Curr Opin Neurobiol       Date:  2016-03-24       Impact factor: 6.627

7.  Modeling the impact of common noise inputs on the network activity of retinal ganglion cells.

Authors:  Michael Vidne; Yashar Ahmadian; Jonathon Shlens; Jonathan W Pillow; Jayant Kulkarni; Alan M Litke; E J Chichilnisky; Eero Simoncelli; Liam Paninski
Journal:  J Comput Neurosci       Date:  2011-12-29       Impact factor: 1.621

Review 8.  Periodic population codes: From a single circular variable to higher dimensions, multiple nested scales, and conceptual spaces.

Authors:  Andreas Vm Herz; Alexander Mathis; Martin Stemmler
Journal:  Curr Opin Neurobiol       Date:  2017-09-06       Impact factor: 6.627

9.  On the Structure of Neuronal Population Activity under Fluctuations in Attentional State.

Authors:  Alexander S Ecker; George H Denfield; Matthias Bethge; Andreas S Tolias
Journal:  J Neurosci       Date:  2016-02-03       Impact factor: 6.167

10.  Attention-related changes in correlated neuronal activity arise from normalization mechanisms.

Authors:  Bram-Ernst Verhoef; John H R Maunsell
Journal:  Nat Neurosci       Date:  2017-05-29       Impact factor: 24.884

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