Literature DB >> 21602497

Sparse low-order interaction network underlies a highly correlated and learnable neural population code.

Elad Ganmor1, Ronen Segev, Elad Schneidman.   

Abstract

Information is carried in the brain by the joint activity patterns of large groups of neurons. Understanding the structure and function of population neural codes is challenging because of the exponential number of possible activity patterns and dependencies among neurons. We report here that for groups of ~100 retinal neurons responding to natural stimuli, pairwise-based models, which were highly accurate for small networks, are no longer sufficient. We show that because of the sparse nature of the neural code, the higher-order interactions can be easily learned using a novel model and that a very sparse low-order interaction network underlies the code of large populations of neurons. Additionally, we show that the interaction network is organized in a hierarchical and modular manner, which hints at scalability. Our results suggest that learnability may be a key feature of the neural code.

Mesh:

Year:  2011        PMID: 21602497      PMCID: PMC3111274          DOI: 10.1073/pnas.1019641108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Correlated firing in macaque visual area MT: time scales and relationship to behavior.

Authors:  W Bair; E Zohary; W T Newsome
Journal:  J Neurosci       Date:  2001-03-01       Impact factor: 6.167

2.  Synergy, redundancy, and independence in population codes.

Authors:  Elad Schneidman; William Bialek; Michael J Berry
Journal:  J Neurosci       Date:  2003-12-17       Impact factor: 6.167

3.  Nonuniversal critical dynamics in Monte Carlo simulations.

Authors: 
Journal:  Phys Rev Lett       Date:  1987-01-12       Impact factor: 9.161

4.  Weak pairwise correlations imply strongly correlated network states in a neural population.

Authors:  Elad Schneidman; Michael J Berry; Ronen Segev; William Bialek
Journal:  Nature       Date:  2006-04-09       Impact factor: 49.962

5.  The structure of multi-neuron firing patterns in primate retina.

Authors:  Jonathon Shlens; Greg D Field; Jeffrey L Gauthier; Matthew I Grivich; Dumitru Petrusca; Alexander Sher; Alan M Litke; E J Chichilnisky
Journal:  J Neurosci       Date:  2006-08-09       Impact factor: 6.167

6.  Reduction of information redundancy in the ascending auditory pathway.

Authors:  Gal Chechik; Michael J Anderson; Omer Bar-Yosef; Eric D Young; Naftali Tishby; Israel Nelken
Journal:  Neuron       Date:  2006-08-03       Impact factor: 17.173

7.  Prediction of spatiotemporal patterns of neural activity from pairwise correlations.

Authors:  O Marre; S El Boustani; Y Frégnac; A Destexhe
Journal:  Phys Rev Lett       Date:  2009-04-02       Impact factor: 9.161

8.  The architecture of functional interaction networks in the retina.

Authors:  Elad Ganmor; Ronen Segev; Elad Schneidman
Journal:  J Neurosci       Date:  2011-02-23       Impact factor: 6.167

9.  Computing with neural circuits: a model.

Authors:  J J Hopfield; D W Tank
Journal:  Science       Date:  1986-08-08       Impact factor: 47.728

10.  Neuronal population coding of movement direction.

Authors:  A P Georgopoulos; A B Schwartz; R E Kettner
Journal:  Science       Date:  1986-09-26       Impact factor: 47.728

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  66 in total

1.  Higher-order interactions characterized in cortical activity.

Authors:  Shan Yu; Hongdian Yang; Hiroyuki Nakahara; Gustavo S Santos; Danko Nikolić; Dietmar Plenz
Journal:  J Neurosci       Date:  2011-11-30       Impact factor: 6.167

2.  Natural grouping of neural responses reveals spatially segregated clusters in prearcuate cortex.

Authors:  Roozbeh Kiani; Christopher J Cueva; John B Reppas; Diogo Peixoto; Stephen I Ryu; William T Newsome
Journal:  Neuron       Date:  2015-02-26       Impact factor: 17.173

3.  A generative spike train model with time-structured higher order correlations.

Authors:  James Trousdale; Yu Hu; Eric Shea-Brown; Krešimir Josić
Journal:  Front Comput Neurosci       Date:  2013-07-17       Impact factor: 2.380

4.  Decoding thalamic afferent input using microcircuit spiking activity.

Authors:  Audrey J Sederberg; Stephanie E Palmer; Jason N MacLean
Journal:  J Neurophysiol       Date:  2015-02-18       Impact factor: 2.714

Review 5.  Information theoretic approaches to understanding circuit function.

Authors:  Adrienne Fairhall; Eric Shea-Brown; Andrea Barreiro
Journal:  Curr Opin Neurobiol       Date:  2012-07-12       Impact factor: 6.627

6.  Improved estimation and interpretation of correlations in neural circuits.

Authors:  Dimitri Yatsenko; Krešimir Josić; Alexander S Ecker; Emmanouil Froudarakis; R James Cotton; Andreas S Tolias
Journal:  PLoS Comput Biol       Date:  2015-03-31       Impact factor: 4.475

7.  Neural assemblies revealed by inferred connectivity-based models of prefrontal cortex recordings.

Authors:  G Tavoni; S Cocco; R Monasson
Journal:  J Comput Neurosci       Date:  2016-07-28       Impact factor: 1.621

Review 8.  Analysis of Neuronal Spike Trains, Deconstructed.

Authors:  Johnatan Aljadeff; Benjamin J Lansdell; Adrienne L Fairhall; David Kleinfeld
Journal:  Neuron       Date:  2016-07-20       Impact factor: 17.173

9.  A Tractable Method for Describing Complex Couplings between Neurons and Population Rate.

Authors:  Christophe Gardella; Olivier Marre; Thierry Mora
Journal:  eNeuro       Date:  2016-08-18

10.  A new method to infer higher-order spike correlations from membrane potentials.

Authors:  Imke C G Reimer; Benjamin Staude; Clemens Boucsein; Stefan Rotter
Journal:  J Comput Neurosci       Date:  2013-03-10       Impact factor: 1.621

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