Literature DB >> 30034029

PCA meets RG.

Serena Bradde1, William Bialek1,2.   

Abstract

A system with many degrees of freedom can be characterized by a covariance matrix; principal components analysis (PCA) focuses on the eigenvalues of this matrix, hoping to find a lower dimensional description. But when the spectrum is nearly continuous, any distinction between components that we keep and those that we ignore becomes arbitrary; it then is natural to ask what happens as we vary this arbitrary cutoff. We argue that this problem is analogous to the momentum shell renormalization group (RG). Following this analogy, we can define relevant and irrelevant operators, where the role of dimensionality is played by properties of the eigenvalue density. These results also suggest an approach to the analysis of real data. As an example, we study neural activity in the vertebrate retina as it responds to naturalistic movies, and find evidence of behavior controlled by a nontrivial fixed point. Applied to financial data, our analysis separates modes dominated by sampling noise from a smaller but still macroscopic number of modes described by a non-Gaussian distribution.

Entities:  

Year:  2017        PMID: 30034029      PMCID: PMC6054449          DOI: 10.1007/s10955-017-1770-6

Source DB:  PubMed          Journal:  J Stat Phys        ISSN: 0022-4715            Impact factor:   1.548


  12 in total

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4.  The statistical mechanics of complex signaling networks: nerve growth factor signaling.

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5.  Fractal measures and their singularities: The characterization of strange sets.

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Journal:  Phys Rev Lett       Date:  2015-03-04       Impact factor: 9.161

8.  Searching for collective behavior in a large network of sensory neurons.

Authors:  Gašper Tkačik; Olivier Marre; Dario Amodei; Elad Schneidman; William Bialek; Michael J Berry
Journal:  PLoS Comput Biol       Date:  2014-01-02       Impact factor: 4.475

9.  Thermodynamics and signatures of criticality in a network of neurons.

Authors:  Gašper Tkačik; Thierry Mora; Olivier Marre; Dario Amodei; Stephanie E Palmer; Michael J Berry; William Bialek
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-01       Impact factor: 11.205

10.  Universally sloppy parameter sensitivities in systems biology models.

Authors:  Ryan N Gutenkunst; Joshua J Waterfall; Fergal P Casey; Kevin S Brown; Christopher R Myers; James P Sethna
Journal:  PLoS Comput Biol       Date:  2007-08-15       Impact factor: 4.475

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  9 in total

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2.  Coarse Graining, Fixed Points, and Scaling in a Large Population of Neurons.

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4.  Gaussian Information Bottleneck and the Non-Perturbative Renormalization Group.

Authors:  Adam G Kline; Stephanie E Palmer
Journal:  New J Phys       Date:  2022-03-09       Impact factor: 3.729

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Authors:  Roman Baravalle; Fernando Montani
Journal:  Entropy (Basel)       Date:  2020-04-22       Impact factor: 2.524

6.  Optimal Encoding in Stochastic Latent-Variable Models.

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7.  Field Theoretical Approach for Signal Detection in Nearly Continuous Positive Spectra II: Tensorial Data.

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8.  The spectrum of covariance matrices of randomly connected recurrent neuronal networks with linear dynamics.

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9.  Random Matrix Analysis of Ca2+ Signals in β-Cell Collectives.

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Journal:  Front Physiol       Date:  2019-09-18       Impact factor: 4.566

  9 in total

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