Literature DB >> 33608507

A unifying framework for mean-field theories of asymmetric kinetic Ising systems.

Miguel Aguilera1,2,3, S Amin Moosavi4,5, Hideaki Shimazaki4,6.   

Abstract

Kinetic Ising models are powerful tools for studying the non-equilibrium dynamics of complex systems. As their behavior is not tractable for large networks, many mean-field methods have been proposed for their analysis, each based on unique assumptions about the system's temporal evolution. This disparity of approaches makes it challenging to systematically advance mean-field methods beyond previous contributions. Here, we propose a unifying framework for mean-field theories of asymmetric kinetic Ising systems from an information geometry perspective. The framework is built on Plefka expansions of a system around a simplified model obtained by an orthogonal projection to a sub-manifold of tractable probability distributions. This view not only unifies previous methods but also allows us to develop novel methods that, in contrast with traditional approaches, preserve the system's correlations. We show that these new methods can outperform previous ones in predicting and assessing network properties near maximally fluctuating regimes.

Entities:  

Year:  2021        PMID: 33608507     DOI: 10.1038/s41467-021-20890-5

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  19 in total

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Authors: 
Journal:  Phys Rev Lett       Date:  1993-10-11       Impact factor: 9.161

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Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-28       Impact factor: 11.205

3.  Weak pairwise correlations imply strongly correlated network states in a neural population.

Authors:  Elad Schneidman; Michael J Berry; Ronen Segev; William Bialek
Journal:  Nature       Date:  2006-04-09       Impact factor: 49.962

Review 4.  Multi-neuronal activity and functional connectivity in cell assemblies.

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Journal:  Curr Opin Neurobiol       Date:  2014-11-08       Impact factor: 6.627

5.  Dynamical criticality in the collective activity of a population of retinal neurons.

Authors:  Thierry Mora; Stéphane Deny; Olivier Marre
Journal:  Phys Rev Lett       Date:  2015-02-20       Impact factor: 9.161

Review 6.  Stochastic thermodynamics, fluctuation theorems and molecular machines.

Authors:  Udo Seifert
Journal:  Rep Prog Phys       Date:  2012-11-20

7.  Whole-brain functional imaging at cellular resolution using light-sheet microscopy.

Authors:  Misha B Ahrens; Michael B Orger; Drew N Robson; Jennifer M Li; Philipp J Keller
Journal:  Nat Methods       Date:  2013-03-18       Impact factor: 28.547

8.  Inverse Ising problem in continuous time: A latent variable approach.

Authors:  Christian Donner; Manfred Opper
Journal:  Phys Rev E       Date:  2017-12-04       Impact factor: 2.529

9.  Adrenalectomy exacerbates paw edema without interfering with desensitization induced by PAF-acether in rats.

Authors:  P M Silva; M A Martins; H C Castro-Faria-Neto; R S Cordeiro; B B Vargaftig
Journal:  Braz J Med Biol Res       Date:  1988       Impact factor: 2.590

10.  Thermodynamics and signatures of criticality in a network of neurons.

Authors:  Gašper Tkačik; Thierry Mora; Olivier Marre; Dario Amodei; Stephanie E Palmer; Michael J Berry; William Bialek
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-01       Impact factor: 11.205

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  1 in total

1.  Optimal Population Coding for Dynamic Input by Nonequilibrium Networks.

Authors:  Kevin S Chen
Journal:  Entropy (Basel)       Date:  2022-04-25       Impact factor: 2.738

  1 in total

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