Literature DB >> 29380087

Issues in data expansion in understanding criticality in biological systems.

Vaibhav Wasnik1.   

Abstract

At the point of a second-order phase transition also termed as a critical point, systems display long-range order and their macroscopic behaviors are independent of the microscopic details making up the system. Due to these properties, it has long been speculated that biological systems that show similar behavior despite having very different microscopics, may be operating near a critical point. Recent methods in neuroscience are making it possible to explore whether criticality exists in neural networks. Despite being large in size, many datasets are only a minute sample of the neural system and methods have to be developed to expand these datasets to study criticality. In this work we develop an analytical method of expanding a dataset to the large N limit to make statements about the critical nature of the dataset. We show that different ways of expanding the dataset while keeping its variance and mean fixed yield different results regarding criticality. This hence casts doubts on the established procedures for deducing criticality of biological systems through expansion of finite-sized datasets.

Keywords:  Living systems: Biological networks

Mesh:

Year:  2018        PMID: 29380087     DOI: 10.1140/epje/i2018-11621-0

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  9 in total

1.  Criticality and scaling in evolutionary ecology.

Authors: 
Journal:  Trends Ecol Evol       Date:  1999-04       Impact factor: 17.712

2.  Weak pairwise correlations imply strongly correlated network states in a neural population.

Authors:  Elad Schneidman; Michael J Berry; Ronen Segev; William Bialek
Journal:  Nature       Date:  2006-04-09       Impact factor: 49.962

3.  Gene expression dynamics in the macrophage exhibit criticality.

Authors:  Matti Nykter; Nathan D Price; Maximino Aldana; Stephen A Ramsey; Stuart A Kauffman; Leroy E Hood; Olli Yli-Harja; Ilya Shmulevich
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-04       Impact factor: 11.205

4.  Dynamical criticality in the collective activity of a population of retinal neurons.

Authors:  Thierry Mora; Stéphane Deny; Olivier Marre
Journal:  Phys Rev Lett       Date:  2015-02-20       Impact factor: 9.161

5.  Zipf's law and criticality in multivariate data without fine-tuning.

Authors:  David J Schwab; Ilya Nemenman; Pankaj Mehta
Journal:  Phys Rev Lett       Date:  2014-08-07       Impact factor: 9.161

6.  Searching for collective behavior in a large network of sensory neurons.

Authors:  Gašper Tkačik; Olivier Marre; Dario Amodei; Elad Schneidman; William Bialek; Michael J Berry
Journal:  PLoS Comput Biol       Date:  2014-01-02       Impact factor: 4.475

7.  Broadband criticality of human brain network synchronization.

Authors:  Manfred G Kitzbichler; Marie L Smith; Søren R Christensen; Ed Bullmore
Journal:  PLoS Comput Biol       Date:  2009-03-20       Impact factor: 4.475

8.  Thermodynamics and signatures of criticality in a network of neurons.

Authors:  Gašper Tkačik; Thierry Mora; Olivier Marre; Dario Amodei; Stephanie E Palmer; Michael J Berry; William Bialek
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-01       Impact factor: 11.205

9.  Signatures of criticality arise from random subsampling in simple population models.

Authors:  Marcel Nonnenmacher; Christian Behrens; Philipp Berens; Matthias Bethge; Jakob H Macke
Journal:  PLoS Comput Biol       Date:  2017-10-03       Impact factor: 4.475

  9 in total

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