Literature DB >> 26289473

Spike sorting of synchronous spikes from local neuron ensembles.

Felix Franke1, Robert Pröpper2, Henrik Alle3, Philipp Meier2, Jörg R P Geiger3, Klaus Obermayer2, Matthias H J Munk4.   

Abstract

Synchronous spike discharge of cortical neurons is thought to be a fingerprint of neuronal cooperativity. Because neighboring neurons are more densely connected to one another than neurons that are located further apart, near-synchronous spike discharge can be expected to be prevalent and it might provide an important basis for cortical computations. Using microelectrodes to record local groups of neurons does not allow for the reliable separation of synchronous spikes from different cells, because available spike sorting algorithms cannot correctly resolve the temporally overlapping waveforms. We show that high spike sorting performance of in vivo recordings, including overlapping spikes, can be achieved with a recently developed filter-based template matching procedure. Using tetrodes with a three-dimensional structure, we demonstrate with simulated data and ground truth in vitro data, obtained by dual intracellular recording of two neurons located next to a tetrode, that the spike sorting of synchronous spikes can be as successful as the spike sorting of nonoverlapping spikes and that the spatial information provided by multielectrodes greatly reduces the error rates. We apply the method to tetrode recordings from the prefrontal cortex of behaving primates, and we show that overlapping spikes can be identified and assigned to individual neurons to study synchronous activity in local groups of neurons.
Copyright © 2015 the American Physiological Society.

Entities:  

Keywords:  overlapping spikes; simultaneous intracellular and extracellular recordings; spike sorting; synchronous spikes; template matching

Mesh:

Year:  2015        PMID: 26289473      PMCID: PMC4725215          DOI: 10.1152/jn.00993.2014

Source DB:  PubMed          Journal:  J Neurophysiol        ISSN: 0022-3077            Impact factor:   2.714


  42 in total

1.  Spike sorting based on discrete wavelet transform coefficients.

Authors:  J C Letelier; P P Weber
Journal:  J Neurosci Methods       Date:  2000-09-15       Impact factor: 2.390

2.  Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering.

Authors:  R Quian Quiroga; Z Nadasdy; Y Ben-Shaul
Journal:  Neural Comput       Date:  2004-08       Impact factor: 2.026

3.  Recording spikes from a large fraction of the ganglion cells in a retinal patch.

Authors:  Ronen Segev; Joe Goodhouse; Jason Puchalla; Michael J Berry
Journal:  Nat Neurosci       Date:  2004-10       Impact factor: 24.884

4.  A new action potential detector using the MTEO and its effects on spike sorting systems at low signal-to-noise ratios.

Authors:  Joon Hwan Choi; Hae Kyung Jung; Taejeong Kim
Journal:  IEEE Trans Biomed Eng       Date:  2006-04       Impact factor: 4.538

5.  Behavioral performance modulates spike field coherence in monkey prefrontal cortex.

Authors:  Wei Wu; Diek W Wheeler; Ellen S Staedtler; Matthias H J Munk; Gordon Pipa
Journal:  Neuroreport       Date:  2008-01-22       Impact factor: 1.837

6.  Automatic sorting for multi-neuronal activity recorded with tetrodes in the presence of overlapping spikes.

Authors:  Susumu Takahashi; Yuichiro Anzai; Yoshio Sakurai
Journal:  J Neurophysiol       Date:  2002-12-18       Impact factor: 2.714

7.  Applicability of independent component analysis on high-density microelectrode array recordings.

Authors:  David Jäckel; Urs Frey; Michele Fiscella; Felix Franke; Andreas Hierlemann
Journal:  J Neurophysiol       Date:  2012-04-04       Impact factor: 2.714

Review 8.  Dendritic excitability and synaptic plasticity.

Authors:  P Jesper Sjöström; Ede A Rancz; Arnd Roth; Michael Häusser
Journal:  Physiol Rev       Date:  2008-04       Impact factor: 37.312

9.  Complexity optimization and high-throughput low-latency hardware implementation of a multi-electrode spike-sorting algorithm.

Authors:  Jelena Dragas; David Jackel; Andreas Hierlemann; Felix Franke
Journal:  IEEE Trans Neural Syst Rehabil Eng       Date:  2014-11-13       Impact factor: 3.802

10.  How many neurons can we see with current spike sorting algorithms?

Authors:  Carlos Pedreira; Juan Martinez; Matias J Ison; Rodrigo Quian Quiroga
Journal:  J Neurosci Methods       Date:  2012-07-25       Impact factor: 2.390

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  12 in total

Review 1.  Recent progress in multi-electrode spike sorting methods.

Authors:  Baptiste Lefebvre; Pierre Yger; Olivier Marre
Journal:  J Physiol Paris       Date:  2017-03-02

Review 2.  Continuing progress of spike sorting in the era of big data.

Authors:  David Carlson; Lawrence Carin
Journal:  Curr Opin Neurobiol       Date:  2019-03-08       Impact factor: 6.627

3.  A modulated template-matching approach to improve spike sorting of bursting neurons.

Authors:  Payam S Shabestari; Alessio P Buccino; Sreedhar S Kumar; Alessandra Pedrocchi; Andreas Hierlemann
Journal:  IEEE Biomed Circuits Syst Conf       Date:  2021-12-23

4.  Synchrony, connectivity, and functional similarity in auditory midbrain local circuits.

Authors:  Craig A Atencio; Victor Shen; Christoph E Schreiner
Journal:  Neuroscience       Date:  2016-08-17       Impact factor: 3.590

5.  Model-based spike sorting with a mixture of drifting t-distributions.

Authors:  Kevin Q Shan; Evgueniy V Lubenov; Athanassios G Siapas
Journal:  J Neurosci Methods       Date:  2017-06-23       Impact factor: 2.390

6.  Combination of High-density Microelectrode Array and Patch Clamp Recordings to Enable Studies of Multisynaptic Integration.

Authors:  David Jäckel; Douglas J Bakkum; Thomas L Russell; Jan Müller; Milos Radivojevic; Urs Frey; Felix Franke; Andreas Hierlemann
Journal:  Sci Rep       Date:  2017-04-20       Impact factor: 4.379

7.  Automatic spike sorting for high-density microelectrode arrays.

Authors:  Roland Diggelmann; Michele Fiscella; Andreas Hierlemann; Felix Franke
Journal:  J Neurophysiol       Date:  2018-09-12       Impact factor: 2.714

8.  Electrical Identification and Selective Microstimulation of Neuronal Compartments Based on Features of Extracellular Action Potentials.

Authors:  Milos Radivojevic; David Jäckel; Michael Altermatt; Jan Müller; Vijay Viswam; Andreas Hierlemann; Douglas J Bakkum
Journal:  Sci Rep       Date:  2016-08-11       Impact factor: 4.379

9.  Sorting Overlapping Spike Waveforms from Electrode and Tetrode Recordings.

Authors:  Yasamin Mokri; Rodrigo F Salazar; Baldwin Goodell; Jonathan Baker; Charles M Gray; Shih-Cheng Yen
Journal:  Front Neuroinform       Date:  2017-08-17       Impact factor: 4.081

10.  A spike sorting toolbox for up to thousands of electrodes validated with ground truth recordings in vitro and in vivo.

Authors:  Pierre Yger; Giulia Lb Spampinato; Elric Esposito; Baptiste Lefebvre; Stéphane Deny; Christophe Gardella; Marcel Stimberg; Florian Jetter; Guenther Zeck; Serge Picaud; Jens Duebel; Olivier Marre
Journal:  Elife       Date:  2018-03-20       Impact factor: 8.140

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