Literature DB >> 12612049

Automatic sorting for multi-neuronal activity recorded with tetrodes in the presence of overlapping spikes.

Susumu Takahashi1, Yuichiro Anzai, Yoshio Sakurai.   

Abstract

Multi-neuronal recording is a powerful electrophysiological technique that has revealed much of what is known about the neuronal interactions in the brain. However, it is difficult to detect precise spike timings, especially synchronized simultaneous firings, among closely neighboring neurons recorded by one common electrode because spike waveforms overlap on the electrode when two or more neurons fire simultaneously. In addition, the non-Gaussian variability (nonstationarity) of spike waveforms, typically seen in the presence of so-called complex spikes, limits the ability to sort multi-neuronal activities into their single-neuron components. Because of these problems, the ordinary spike-sorting techniques often give inaccurate results. Our previous study has shown that independent component analysis (ICA) can solve these problems and separate single-neuron components from multi-neuronal recordings. The ICA has, however, one serious limitation that the number of separated neurons must be less than the number of electrodes. The present study combines the ICA and the efficiency of the ordinary spike-sorting technique (k-means clustering) to solve the spike-overlapping and the nonstationarity problems with no limitation on the number of single neurons to be separated. First, multi-neuronal activities are sorted into an overly large number of clusters by k-means clustering. Second, the sorted clusters are decomposed by ICA. Third, the decomposed clusters are progressively aggregated into a minimal set of putative single neurons based on similarities of basis vectors estimated by ICA. We applied the present procedure to multi-neuronal waveforms recorded with tetrodes composed of four microwires in the prefrontal cortex of awake behaving monkeys. The results demonstrate that there are functional connections among neighboring pyramidal neurons, some of which fire in a precise simultaneous manner and that precisely time-locked monosynaptic connections are working between neighboring pyramidal neurons and interneurons. Detection of these phenomena suggests that the present procedure can sort multi-neuronal activities, which include overlapping spikes and realistic non-Gaussian variability of spike waveforms, into their single-neuron components. We processed several types of synthesized data sets in this procedure and confirmed that the procedure was highly reliable and stable. The present method provides insights into the local circuit bases of excitatory and inhibitory interactions among neighboring neurons.

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Year:  2002        PMID: 12612049     DOI: 10.1152/jn.00827.2002

Source DB:  PubMed          Journal:  J Neurophysiol        ISSN: 0022-3077            Impact factor:   2.714


  36 in total

1.  Robustness of the significance of spike synchrony with respect to sorting errors.

Authors:  Antonio Pazienti; Sonja Grün
Journal:  J Comput Neurosci       Date:  2006-08-14       Impact factor: 1.621

2.  Dynamic synchrony of firing in the monkey prefrontal cortex during working-memory tasks.

Authors:  Yoshio Sakurai; Susumu Takahashi
Journal:  J Neurosci       Date:  2006-10-04       Impact factor: 6.167

Review 3.  Recent progress in multi-electrode spike sorting methods.

Authors:  Baptiste Lefebvre; Pierre Yger; Olivier Marre
Journal:  J Physiol Paris       Date:  2017-03-02

4.  Automated spike sorting using density grid contour clustering and subtractive waveform decomposition.

Authors:  Carlos Vargas-Irwin; John P Donoghue
Journal:  J Neurosci Methods       Date:  2007-04-12       Impact factor: 2.390

5.  Spike sorting based on multi-class support vector machine with superposition resolution.

Authors:  Weidong Ding; Jingqi Yuan
Journal:  Med Biol Eng Comput       Date:  2007-09-15       Impact factor: 2.602

6.  Spike sorting by stochastic simulation.

Authors:  Di Ge; Eric Le Carpentier; Jérôme Idier; Dario Farina
Journal:  IEEE Trans Neural Syst Rehabil Eng       Date:  2011-02-10       Impact factor: 3.802

7.  A multistage mathematical approach to automated clustering of high-dimensional noisy data.

Authors:  Alexander Friedman; Michael D Keselman; Leif G Gibb; Ann M Graybiel
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-23       Impact factor: 11.205

8.  Spike sorting of synchronous spikes from local neuron ensembles.

Authors:  Felix Franke; Robert Pröpper; Henrik Alle; Philipp Meier; Jörg R P Geiger; Klaus Obermayer; Matthias H J Munk
Journal:  J Neurophysiol       Date:  2015-08-19       Impact factor: 2.714

Review 9.  An online spike detection and spike classification algorithm capable of instantaneous resolution of overlapping spikes.

Authors:  Felix Franke; Michal Natora; Clemens Boucsein; Matthias H J Munk; Klaus Obermayer
Journal:  J Comput Neurosci       Date:  2009-06-05       Impact factor: 1.621

10.  Sub-Millisecond Firing Synchrony of Closely Neighboring Pyramidal Neurons in Hippocampal CA1 of Rats During Delayed Non-Matching to Sample Task.

Authors:  Susumu Takahashi; Yoshio Sakurai
Journal:  Front Neural Circuits       Date:  2009-09-07       Impact factor: 3.492

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