Literature DB >> 25415989

Complexity optimization and high-throughput low-latency hardware implementation of a multi-electrode spike-sorting algorithm.

Jelena Dragas, David Jackel, Andreas Hierlemann, Felix Franke.   

Abstract

Reliable real-time low-latency spike sorting with large data throughput is essential for studies of neural network dynamics and for brain-machine interfaces (BMIs), in which the stimulation of neural networks is based on the networks' most recent activity. However, the majority of existing multi-electrode spike-sorting algorithms are unsuited for processing high quantities of simultaneously recorded data. Recording from large neuronal networks using large high-density electrode sets (thousands of electrodes) imposes high demands on the data-processing hardware regarding computational complexity and data transmission bandwidth; this, in turn, entails demanding requirements in terms of chip area, memory resources and processing latency. This paper presents computational complexity optimization techniques, which facilitate the use of spike-sorting algorithms in large multi-electrode-based recording systems. The techniques are then applied to a previously published algorithm, on its own, unsuited for large electrode set recordings. Further, a real-time low-latency high-performance VLSI hardware architecture of the modified algorithm is presented, featuring a folded structure capable of processing the activity of hundreds of neurons simultaneously. The hardware is reconfigurable “on-the-fly” and adaptable to the nonstationarities of neuronal recordings. By transmitting exclusively spike time stamps and/or spike waveforms, its real-time processing offers the possibility of data bandwidth and data storage reduction.

Entities:  

Mesh:

Year:  2014        PMID: 25415989      PMCID: PMC5421577          DOI: 10.1109/TNSRE.2014.2370510

Source DB:  PubMed          Journal:  IEEE Trans Neural Syst Rehabil Eng        ISSN: 1534-4320            Impact factor:   3.802


  19 in total

Review 1.  A review of methods for spike sorting: the detection and classification of neural action potentials.

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Journal:  Network       Date:  1998-11       Impact factor: 1.273

2.  Technology-aware algorithm design for neural spike detection, feature extraction, and dimensionality reduction.

Authors:  Sarah Gibson; Jack W Judy; Dejan Marković
Journal:  IEEE Trans Neural Syst Rehabil Eng       Date:  2010-06-03       Impact factor: 3.802

3.  An extensible infrastructure for fully automated spike sorting during online experiments.

Authors:  Gopal Santhanam; Maneesh Sahani; Stephen Ryu; Krishna Shenoy
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2004

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Authors:  Tung-Chien Chen; Wentai Liu; Liang-Gee Chen
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2008

5.  A new method for the insertion of multiple microprobes into neural and muscular tissue, including fiber electrodes, fine wires, needles and microsensors.

Authors:  R Eckhorn; U Thomas
Journal:  J Neurosci Methods       Date:  1993-09       Impact factor: 2.390

Review 6.  An online spike detection and spike classification algorithm capable of instantaneous resolution of overlapping spikes.

Authors:  Felix Franke; Michal Natora; Clemens Boucsein; Matthias H J Munk; Klaus Obermayer
Journal:  J Comput Neurosci       Date:  2009-06-05       Impact factor: 1.621

7.  Tetrodes markedly improve the reliability and yield of multiple single-unit isolation from multi-unit recordings in cat striate cortex.

Authors:  C M Gray; P E Maldonado; M Wilson; B McNaughton
Journal:  J Neurosci Methods       Date:  1995-12       Impact factor: 2.390

8.  Applicability of independent component analysis on high-density microelectrode array recordings.

Authors:  David Jäckel; Urs Frey; Michele Fiscella; Felix Franke; Andreas Hierlemann
Journal:  J Neurophysiol       Date:  2012-04-04       Impact factor: 2.714

9.  A model-based spike sorting algorithm for removing correlation artifacts in multi-neuron recordings.

Authors:  Jonathan W Pillow; Jonathon Shlens; E J Chichilnisky; Eero P Simoncelli
Journal:  PLoS One       Date:  2013-05-03       Impact factor: 3.240

10.  High-density microelectrode array recordings and real-time spike sorting for closed-loop experiments: an emerging technology to study neural plasticity.

Authors:  Felix Franke; David Jäckel; Jelena Dragas; Jan Müller; Milos Radivojevic; Douglas Bakkum; Andreas Hierlemann
Journal:  Front Neural Circuits       Date:  2012-12-20       Impact factor: 3.492

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  6 in total

Review 1.  From End to End: Gaining, Sorting, and Employing High-Density Neural Single Unit Recordings.

Authors:  Réka Barbara Bod; János Rokai; Domokos Meszéna; Richárd Fiáth; István Ulbert; Gergely Márton
Journal:  Front Neuroinform       Date:  2022-06-13       Impact factor: 3.739

2.  Spike sorting of synchronous spikes from local neuron ensembles.

Authors:  Felix Franke; Robert Pröpper; Henrik Alle; Philipp Meier; Jörg R P Geiger; Klaus Obermayer; Matthias H J Munk
Journal:  J Neurophysiol       Date:  2015-08-19       Impact factor: 2.714

3.  Combination of High-density Microelectrode Array and Patch Clamp Recordings to Enable Studies of Multisynaptic Integration.

Authors:  David Jäckel; Douglas J Bakkum; Thomas L Russell; Jan Müller; Milos Radivojevic; Urs Frey; Felix Franke; Andreas Hierlemann
Journal:  Sci Rep       Date:  2017-04-20       Impact factor: 4.379

4.  Automatic spike sorting for high-density microelectrode arrays.

Authors:  Roland Diggelmann; Michele Fiscella; Andreas Hierlemann; Felix Franke
Journal:  J Neurophysiol       Date:  2018-09-12       Impact factor: 2.714

5.  Spike Detection for Large Neural Populations Using High Density Multielectrode Arrays.

Authors:  Jens-Oliver Muthmann; Hayder Amin; Evelyne Sernagor; Alessandro Maccione; Dagmara Panas; Luca Berdondini; Upinder S Bhalla; Matthias H Hennig
Journal:  Front Neuroinform       Date:  2015-12-18       Impact factor: 4.081

6.  Low-latency single channel real-time neural spike sorting system based on template matching.

Authors:  Pan Ke Wang; Sio Hang Pun; Chang Hao Chen; Elizabeth A McCullagh; Achim Klug; Anan Li; Mang I Vai; Peng Un Mak; Tim C Lei
Journal:  PLoS One       Date:  2019-11-22       Impact factor: 3.240

  6 in total

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