Literature DB >> 28263793

Recent progress in multi-electrode spike sorting methods.

Baptiste Lefebvre1, Pierre Yger2, Olivier Marre2.   

Abstract

In recent years, arrays of extracellular electrodes have been developed and manufactured to record simultaneously from hundreds of electrodes packed with a high density. These recordings should allow neuroscientists to reconstruct the individual activity of the neurons spiking in the vicinity of these electrodes, with the help of signal processing algorithms. Algorithms need to solve a source separation problem, also known as spike sorting. However, these new devices challenge the classical way to do spike sorting. Here we review different methods that have been developed to sort spikes from these large-scale recordings. We describe the common properties of these algorithms, as well as their main differences. Finally, we outline the issues that remain to be solved by future spike sorting algorithms.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Electrophysiology; Microelectrode array; Multi-electrode array; Signal processing; Spike sorting; Template matching

Mesh:

Year:  2017        PMID: 28263793      PMCID: PMC5581741          DOI: 10.1016/j.jphysparis.2017.02.005

Source DB:  PubMed          Journal:  J Physiol Paris        ISSN: 0928-4257


  52 in total

1.  Spike sorting based on discrete wavelet transform coefficients.

Authors:  J C Letelier; P P Weber
Journal:  J Neurosci Methods       Date:  2000-09-15       Impact factor: 2.390

2.  Chronic, multisite, multielectrode recordings in macaque monkeys.

Authors:  Miguel A L Nicolelis; Dragan Dimitrov; Jose M Carmena; Roy Crist; Gary Lehew; Jerald D Kralik; Steven P Wise
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-05       Impact factor: 11.205

3.  SIMULTANEOUS STUDIES OF FIRING PATTERNS IN SEVERAL NEURONS.

Authors:  G L GERSTEIN; W A CLARK
Journal:  Science       Date:  1964-03-20       Impact factor: 47.728

4.  Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering.

Authors:  R Quian Quiroga; Z Nadasdy; Y Ben-Shaul
Journal:  Neural Comput       Date:  2004-08       Impact factor: 2.026

5.  Spike detection methods for polytrodes and high density microelectrode arrays.

Authors:  Nicholas V Swindale; Martin A Spacek
Journal:  J Comput Neurosci       Date:  2014-11-20       Impact factor: 1.621

6.  Automatic sorting for multi-neuronal activity recorded with tetrodes in the presence of overlapping spikes.

Authors:  Susumu Takahashi; Yuichiro Anzai; Yoshio Sakurai
Journal:  J Neurophysiol       Date:  2002-12-18       Impact factor: 2.714

7.  High-resolution CMOS MEA platform to study neurons at subcellular, cellular, and network levels.

Authors:  Jan Müller; Marco Ballini; Paolo Livi; Yihui Chen; Milos Radivojevic; Amir Shadmani; Vijay Viswam; Ian L Jones; Michele Fiscella; Roland Diggelmann; Alexander Stettler; Urs Frey; Douglas J Bakkum; Andreas Hierlemann
Journal:  Lab Chip       Date:  2015-05-14       Impact factor: 6.799

8.  How many neurons can we see with current spike sorting algorithms?

Authors:  Carlos Pedreira; Juan Martinez; Matias J Ison; Rodrigo Quian Quiroga
Journal:  J Neurosci Methods       Date:  2012-07-25       Impact factor: 2.390

9.  Effects of age-related hearing loss and background noise on neuromagnetic activity from auditory cortex.

Authors:  Claude Alain; Anja Roye; Claire Salloum
Journal:  Front Syst Neurosci       Date:  2014-01-31

10.  Spike sorting for polytrodes: a divide and conquer approach.

Authors:  Nicholas V Swindale; Martin A Spacek
Journal:  Front Syst Neurosci       Date:  2014-02-10
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  14 in total

Review 1.  Continuing progress of spike sorting in the era of big data.

Authors:  David Carlson; Lawrence Carin
Journal:  Curr Opin Neurobiol       Date:  2019-03-08       Impact factor: 6.627

Review 2.  From End to End: Gaining, Sorting, and Employing High-Density Neural Single Unit Recordings.

Authors:  Réka Barbara Bod; János Rokai; Domokos Meszéna; Richárd Fiáth; István Ulbert; Gergely Márton
Journal:  Front Neuroinform       Date:  2022-06-13       Impact factor: 3.739

3.  Spike sorting based on shape, phase, and distribution features, and K-TOPS clustering with validity and error indices.

Authors:  Carmen Rocío Caro-Martín; José M Delgado-García; Agnès Gruart; R Sánchez-Campusano
Journal:  Sci Rep       Date:  2018-12-12       Impact factor: 4.379

4.  Spike sorting with Gaussian mixture models.

Authors:  Bryan C Souza; Vítor Lopes-Dos-Santos; João Bacelo; Adriano B L Tort
Journal:  Sci Rep       Date:  2019-03-06       Impact factor: 4.379

5.  Characterization and Classification of Electrophysiological Signals Represented as Visibility Graphs Using the Maxclique Graph.

Authors:  Erika Elizabeth Rodriguez-Torres; Ulises Paredes-Hernandez; Enrique Vazquez-Mendoza; Margarita Tetlalmatzi-Montiel; Consuelo Morgado-Valle; Luis Beltran-Parrazal; Rafael Villarroel-Flores
Journal:  Front Bioeng Biotechnol       Date:  2020-04-15

6.  SpikeForest, reproducible web-facing ground-truth validation of automated neural spike sorters.

Authors:  Jeremy Magland; James J Jun; Elizabeth Lovero; Alexander J Morley; Cole Lincoln Hurwitz; Alessio Paolo Buccino; Samuel Garcia; Alex H Barnett
Journal:  Elife       Date:  2020-05-19       Impact factor: 8.140

7.  An Accurate and Robust Method for Spike Sorting Based on Convolutional Neural Networks.

Authors:  Zhaohui Li; Yongtian Wang; Nan Zhang; Xiaoli Li
Journal:  Brain Sci       Date:  2020-11-11

8.  Information Entropy Production of Maximum Entropy Markov Chains from Spike Trains.

Authors:  Rodrigo Cofré; Cesar Maldonado
Journal:  Entropy (Basel)       Date:  2018-01-09       Impact factor: 2.524

Review 9.  Electrophysiological Analysis of Brain Organoids: Current Approaches and Advancements.

Authors:  Austin P Passaro; Steven L Stice
Journal:  Front Neurosci       Date:  2021-01-12       Impact factor: 4.677

10.  Sorting Overlapping Spike Waveforms from Electrode and Tetrode Recordings.

Authors:  Yasamin Mokri; Rodrigo F Salazar; Baldwin Goodell; Jonathan Baker; Charles M Gray; Shih-Cheng Yen
Journal:  Front Neuroinform       Date:  2017-08-17       Impact factor: 4.081

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