Literature DB >> 26020498

ClearVolume: open-source live 3D visualization for light-sheet microscopy.

Loic A Royer1, Martin Weigert1, Ulrik Günther2, Nicola Maghelli1, Florian Jug1, Ivo F Sbalzarini2, Eugene W Myers2.   

Abstract

Mesh：

Year:  2015        PMID： 26020498     DOI： 10.1038/nmeth.3372

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  6 in total

1.  Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy.

Authors:  Raju Tomer; Khaled Khairy; Fernando Amat; Philipp J Keller
Journal:  Nat Methods       Date:  2012-06-03       Impact factor: 28.547

2.  Multiview light-sheet microscope for rapid in toto imaging.

Authors:  Uros Krzic; Stefan Gunther; Timothy E Saunders; Sebastian J Streichan; Lars Hufnagel
Journal:  Nat Methods       Date:  2012-06-03       Impact factor: 28.547

3.  High-resolution reconstruction of the beating zebrafish heart.

Authors:  Michaela Mickoleit; Benjamin Schmid; Michael Weber; Florian O Fahrbach; Sonja Hombach; Sven Reischauer; Jan Huisken
Journal:  Nat Methods       Date:  2014-07-20       Impact factor: 28.547

4.  Fiji: an open-source platform for biological-image analysis.

Authors:  Johannes Schindelin; Ignacio Arganda-Carreras; Erwin Frise; Verena Kaynig; Mark Longair; Tobias Pietzsch; Stephan Preibisch; Curtis Rueden; Stephan Saalfeld; Benjamin Schmid; Jean-Yves Tinevez; Daniel James White; Volker Hartenstein; Kevin Eliceiri; Pavel Tomancak; Albert Cardona
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

5.  OpenSPIM: an open-access light-sheet microscopy platform.

Authors:  Peter G Pitrone; Johannes Schindelin; Luke Stuyvenberg; Stephan Preibisch; Michael Weber; Kevin W Eliceiri; Jan Huisken; Pavel Tomancak
Journal:  Nat Methods       Date:  2013-06-09       Impact factor: 28.547

6.  Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution.

Authors:  Bi-Chang Chen; Wesley R Legant; Kai Wang; Lin Shao; Daniel E Milkie; Michael W Davidson; Chris Janetopoulos; Xufeng S Wu; John A Hammer; Zhe Liu; Brian P English; Yuko Mimori-Kiyosue; Daniel P Romero; Alex T Ritter; Jennifer Lippincott-Schwartz; Lillian Fritz-Laylin; R Dyche Mullins; Diana M Mitchell; Joshua N Bembenek; Anne-Cecile Reymann; Ralph Böhme; Stephan W Grill; Jennifer T Wang; Geraldine Seydoux; U Serdar Tulu; Daniel P Kiehart; Eric Betzig
Journal:  Science       Date:  2014-10-23       Impact factor: 47.728
  6 in total
  48 in total

1.  Tilt-invariant scanned oblique plane illumination microscopy for large-scale volumetric imaging.

Authors:  Manish Kumar; Yevgenia Kozorovitskiy
Journal:  Opt Lett       Date:  2019-04-01       Impact factor: 3.776

2.  Hydra image processor: 5-D GPU image analysis library with MATLAB and python wrappers.

Authors:  Eric Wait; Mark Winter; Andrew R Cohen
Journal:  Bioinformatics       Date:  2019-12-15       Impact factor: 6.937

3.  Improving your four-dimensional image: traveling through a decade of light-sheet-based fluorescence microscopy research.

Authors:  Frederic Strobl; Alexander Schmitz; Ernst H K Stelzer
Journal:  Nat Protoc       Date:  2017-05-04       Impact factor: 13.491

4.  Integrated one- and two-photon scanned oblique plane illumination (SOPi) microscopy for rapid volumetric imaging.

Authors:  Manish Kumar; Sandeep Kishore; Jordan Nasenbeny; David L McLean; Yevgenia Kozorovitskiy
Journal:  Opt Express       Date:  2018-05-14       Impact factor: 3.894

5.  Reproducibility and staging of 3D human retinal organoids across multiple pluripotent stem cell lines.

Authors:  Elizabeth E Capowski; Kayvan Samimi; Steven J Mayerl; M Joseph Phillips; Isabel Pinilla; Sara E Howden; Jishnu Saha; Alex D Jansen; Kimberly L Edwards; Lindsey D Jager; Katherine Barlow; Rasa Valiauga; Zachary Erlichman; Anna Hagstrom; Divya Sinha; Valentin M Sluch; Xitiz Chamling; Donald J Zack; Melissa C Skala; David M Gamm
Journal:  Development       Date:  2019-01-09       Impact factor: 6.868

6.  Micro-Magellan: open-source, sample-adaptive, acquisition software for optical microscopy.

Authors:  Henry Pinkard; Nico Stuurman; Kaitlin Corbin; Ronald Vale; Matthew F Krummel
Journal:  Nat Methods       Date:  2016-09-29       Impact factor: 28.547

Review 7.  Large-scale 3-dimensional quantitative imaging of tissues: state-of-the-art and translational implications.

Authors:  Seth Winfree; Michael J Ferkowicz; Pierre C Dagher; Katherine J Kelly; Michael T Eadon; Timothy A Sutton; Troy A Markel; Mervin C Yoder; Kenneth W Dunn; Tarek M El-Achkar
Journal:  Transl Res       Date:  2017-07-22       Impact factor: 7.012

8.  Differential requirements for cyclase-associated protein (CAP) in actin-dependent processes of Toxoplasma gondii.

Authors:  Matthew Robert Geoffrey Russell; Jeanette Wagener; Alex Hunt; Robyn Kent; Romain Carmeille; Christopher J Peddie; Lucy Collinson; Aoife Heaslip; Gary E Ward; Moritz Treeck
Journal:  Elife       Date:  2019-10-02       Impact factor: 8.140

9.  Basigin Associates with Integrin in Order to Regulate Perineurial Glia and Drosophila Nervous System Morphology.

Authors:  Amelia C Hunter; Lindsay M Petley-Ragan; Mriga Das; Vanessa J Auld
Journal:  J Neurosci       Date:  2020-04-07       Impact factor: 6.167

Review 10.  Tutorial: guidance for quantitative confocal microscopy.

Authors:  James Jonkman; Claire M Brown; Graham D Wright; Kurt I Anderson; Alison J North
Journal:  Nat Protoc       Date:  2020-03-31       Impact factor: 13.491
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