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Literature DB >> 23749304

OpenSPIM: an open-access light-sheet microscopy platform.

Peter G Pitrone, Johannes Schindelin, Luke Stuyvenberg, Stephan Preibisch, Michael Weber, Kevin W Eliceiri, Jan Huisken, Pavel Tomancak.

Abstract

Entities: Disease Gene Species

Mesh：

Year: 2013 PMID： 23749304 DOI： 10.1038/nmeth.2507

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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6 in total

1. Optical sectioning deep inside live embryos by selective plane illumination microscopy.

Authors: Jan Huisken; Jim Swoger; Filippo Del Bene; Joachim Wittbrodt; Ernst H K Stelzer
Journal: Science Date: 2004-08-13 Impact factor: 47.728

Review 2. Light sheet microscopy for real-time developmental biology.

Authors: Michael Weber; Jan Huisken
Journal: Curr Opin Genet Dev Date: 2011-09-30 Impact factor: 5.578

3. Software for bead-based registration of selective plane illumination microscopy data.

Authors: Stephan Preibisch; Stephan Saalfeld; Johannes Schindelin; Pavel Tomancak
Journal: Nat Methods Date: 2010-06 Impact factor: 28.547

4. A toolkit for high-throughput, cross-species gene engineering in Drosophila.

Authors: Radoslaw K Ejsmont; Mihail Sarov; Sylke Winkler; Kamil A Lipinski; Pavel Tomancak
Journal: Nat Methods Date: 2009-06 Impact factor: 28.547

5. Fiji: an open-source platform for biological-image analysis.

Authors: Johannes Schindelin; Ignacio Arganda-Carreras; Erwin Frise; Verena Kaynig; Mark Longair; Tobias Pietzsch; Stephan Preibisch; Curtis Rueden; Stephan Saalfeld; Benjamin Schmid; Jean-Yves Tinevez; Daniel James White; Volker Hartenstein; Kevin Eliceiri; Pavel Tomancak; Albert Cardona
Journal: Nat Methods Date: 2012-06-28 Impact factor: 28.547

6. Computer control of microscopes using µManager.

Authors: Arthur Edelstein; Nenad Amodaj; Karl Hoover; Ron Vale; Nico Stuurman
Journal: Curr Protoc Mol Biol Date: 2010-10

6 in total

101 in total

1. Efficient processing and analysis of large-scale light-sheet microscopy data.

Authors: Fernando Amat; Burkhard Höckendorf; Yinan Wan; William C Lemon; Katie McDole; Philipp J Keller
Journal: Nat Protoc Date: 2015-10-01 Impact factor: 13.491

2. Imaging fluorescence (cross-) correlation spectroscopy in live cells and organisms.

Authors: Jan W Krieger; Anand P Singh; Nirmalya Bag; Christoph S Garbe; Timothy E Saunders; Jörg Langowski; Thorsten Wohland
Journal: Nat Protoc Date: 2015-11-05 Impact factor: 13.491

3. Macro-optical trapping for sample confinement in light sheet microscopy.

Authors: Zhengyi Yang; Peeter Piksarv; David E K Ferrier; Frank J Gunn-Moore; Kishan Dholakia
Journal: Biomed Opt Express Date: 2015-07-08 Impact factor: 3.732

4. Compact plane illumination plugin device to enable light sheet fluorescence imaging of multi-cellular organisms on an inverted wide-field microscope.

Authors: Zeyi Guan; Juhyun Lee; Hao Jiang; Siyan Dong; Nelson Jen; Tzung Hsiai; Chih-Ming Ho; Peng Fei
Journal: Biomed Opt Express Date: 2015-12-21 Impact factor: 3.732

OpenSPIM: an open-access light-sheet microscopy platform.

1. Optical sectioning deep inside live embryos by selective plane illumination microscopy.

Review 2. Light sheet microscopy for real-time developmental biology.

3. Software for bead-based registration of selective plane illumination microscopy data.

4. A toolkit for high-throughput, cross-species gene engineering in Drosophila.

5. Fiji: an open-source platform for biological-image analysis.

6. Computer control of microscopes using µManager.

1. Efficient processing and analysis of large-scale light-sheet microscopy data.

2. Imaging fluorescence (cross-) correlation spectroscopy in live cells and organisms.

3. Macro-optical trapping for sample confinement in light sheet microscopy.

4. Compact plane illumination plugin device to enable light sheet fluorescence imaging of multi-cellular organisms on an inverted wide-field microscope.

5. Tilt-invariant scanned oblique plane illumination microscopy for large-scale volumetric imaging.

Review 6. The ImageJ ecosystem: An open platform for biomedical image analysis.

7. ClearVolume: open-source live 3D visualization for light-sheet microscopy.

8. A compact Airy beam light sheet microscope with a tilted cylindrical lens.

9. Light Sheet-based Fluorescence Microscopy of Living or Fixed and Stained Tribolium castaneum Embryos.

Review 10. Advanced imaging techniques for the study of plant growth and development.