Literature DB >> 27684577

Micro-Magellan: open-source, sample-adaptive, acquisition software for optical microscopy.

Henry Pinkard1,2,3, Nico Stuurman4,5, Kaitlin Corbin1,2, Ronald Vale4,5, Matthew F Krummel1,2.   

Abstract

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Year:  2016        PMID: 27684577      PMCID: PMC5100821          DOI: 10.1038/nmeth.3991

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


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  6 in total

1.  The smart and gentle microscope.

Authors:  Nico Scherf; Jan Huisken
Journal:  Nat Biotechnol       Date:  2015-08       Impact factor: 54.908

2.  ClearVolume: open-source live 3D visualization for light-sheet microscopy.

Authors:  Loic A Royer; Martin Weigert; Ulrik Günther; Nicola Maghelli; Florian Jug; Ivo F Sbalzarini; Eugene W Myers
Journal:  Nat Methods       Date:  2015-06       Impact factor: 28.547

3.  BigDataViewer: visualization and processing for large image data sets.

Authors:  Tobias Pietzsch; Stephan Saalfeld; Stephan Preibisch; Pavel Tomancak
Journal:  Nat Methods       Date:  2015-06       Impact factor: 28.547

4.  Biological imaging software tools.

Authors:  Kevin W Eliceiri; Michael R Berthold; Ilya G Goldberg; Luis Ibáñez; B S Manjunath; Maryann E Martone; Robert F Murphy; Hanchuan Peng; Anne L Plant; Badrinath Roysam; Nico Stuurman; Nico Stuurmann; Jason R Swedlow; Pavel Tomancak; Anne E Carpenter
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

5.  Advanced methods of microscope control using μManager software.

Authors:  Arthur D Edelstein; Mark A Tsuchida; Nenad Amodaj; Henry Pinkard; Ronald D Vale; Nico Stuurman
Journal:  J Biol Methods       Date:  2014

6.  Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis.

Authors:  Hanchuan Peng; Jianyong Tang; Hang Xiao; Alessandro Bria; Jianlong Zhou; Victoria Butler; Zhi Zhou; Paloma T Gonzalez-Bellido; Seung W Oh; Jichao Chen; Ananya Mitra; Richard W Tsien; Hongkui Zeng; Giorgio A Ascoli; Giulio Iannello; Michael Hawrylycz; Eugene Myers; Fuhui Long
Journal:  Nat Commun       Date:  2014-07-11       Impact factor: 14.919

  6 in total
  7 in total

1.  A natural killer-dendritic cell axis defines checkpoint therapy-responsive tumor microenvironments.

Authors:  Kevin C Barry; Joy Hsu; Miranda L Broz; Francisco J Cueto; Mikhail Binnewies; Alexis J Combes; Amanda E Nelson; Kimberly Loo; Raj Kumar; Michael D Rosenblum; Michael D Alvarado; Denise M Wolf; Dusan Bogunovic; Nina Bhardwaj; Adil I Daud; Patrick K Ha; William R Ryan; Joshua L Pollack; Bushra Samad; Saurabh Asthana; Vincent Chan; Matthew F Krummel
Journal:  Nat Med       Date:  2018-06-25       Impact factor: 53.440

2.  Event-driven acquisition for content-enriched microscopy.

Authors:  Dora Mahecic; Willi L Stepp; Chen Zhang; Juliette Griffié; Martin Weigert; Suliana Manley
Journal:  Nat Methods       Date:  2022-09-08       Impact factor: 47.990

3.  Layilin Anchors Regulatory T Cells in Skin.

Authors:  Pooja Mehta; Victoire Gouirand; Devi P Boda; Jingxian Zhang; Sofia V Gearty; Bahar Zirak; Margaret M Lowe; Sean Clancy; Ian Boothby; Kelly M Mahuron; Adam Fries; Matthew F Krummel; Parminder Mankoo; Hsin-Wen Chang; Jared Liu; Joshua M Moreau; Tiffany C Scharschmidt; Adil Daud; Esther Kim; Isaac M Neuhaus; Hobart W Harris; Wilson Liao; Michael D Rosenblum
Journal:  J Immunol       Date:  2021-09-01       Impact factor: 5.426

4.  SmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology.

Authors:  Brian Long; Zhi Zhou; Ali Cetin; Jonathan Ting; Ryder Gwinn; Bosiljka Tasic; Tanya Daigle; Ed Lein; Hongkui Zeng; Peter Saggau; Michael Hawrylycz; Hanchuan Peng
Journal:  Sci Rep       Date:  2017-08-24       Impact factor: 4.379

5.  OpenHiCAMM: High-Content Screening Software for Complex Microscope Imaging Workflows.

Authors:  Benjamin W Booth; Charles McParland; Keith Beattie; William W Fisher; Ann S Hammonds; Susan E Celniker; Erwin Frise
Journal:  iScience       Date:  2018-04-27

6.  Enabling reactive microscopy with MicroMator.

Authors:  Zachary R Fox; Steven Fletcher; Achille Fraisse; Chetan Aditya; Sebastián Sosa-Carrillo; Julienne Petit; Sébastien Gilles; François Bertaux; Jakob Ruess; Gregory Batt
Journal:  Nat Commun       Date:  2022-04-22       Impact factor: 17.694

7.  CyberSco.Py an open-source software for event-based, conditional microscopy.

Authors:  Lionel Chiron; Matthias Le Bec; Céline Cordier; Sylvain Pouzet; Dimitrije Milunov; Alvaro Banderas; Jean-Marc Di Meglio; Benoit Sorre; Pascal Hersen
Journal:  Sci Rep       Date:  2022-07-08       Impact factor: 4.996

  7 in total

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