Literature DB >> 25042787

High-resolution reconstruction of the beating zebrafish heart.

Michaela Mickoleit1, Benjamin Schmid1, Michael Weber1, Florian O Fahrbach1, Sonja Hombach2, Sven Reischauer3, Jan Huisken1.   

Abstract

The heart's continuous motion makes it difficult to capture high-resolution images of this organ in vivo. We developed tools based on high-speed selective plane illumination microscopy (SPIM), offering pristine views into the beating zebrafish heart. We captured three-dimensional cardiac dynamics with postacquisition synchronization of multiview movie stacks, obtained static high-resolution reconstructions by briefly stopping the heart with optogenetics and resolved nonperiodic phenomena by high-speed volume scanning with a liquid lens.

Entities:  

Mesh：

Year:  2014        PMID： 25042787     DOI： 10.1038/nmeth.3037

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  27 in total

1.  Transplantation and in vivo imaging of multilineage engraftment in zebrafish bloodless mutants.

Authors:  David Traver; Barry H Paw; Kenneth D Poss; W Todd Penberthy; Shuo Lin; Leonard I Zon
Journal:  Nat Immunol       Date:  2003-11-09       Impact factor: 25.606

2.  Intracardiac fluid forces are an essential epigenetic factor for embryonic cardiogenesis.

Authors:  Jay R Hove; Reinhard W Köster; Arian S Forouhar; Gabriel Acevedo-Bolton; Scott E Fraser; Morteza Gharib
Journal:  Nature       Date:  2003-01-09       Impact factor: 49.962

3.  Optical sectioning deep inside live embryos by selective plane illumination microscopy.

Authors:  Jan Huisken; Jim Swoger; Filippo Del Bene; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Science       Date:  2004-08-13       Impact factor: 47.728

4.  Cellular and molecular analyses of vascular tube and lumen formation in zebrafish.

Authors:  Suk-Won Jin; Dimitris Beis; Tracy Mitchell; Jau-Nian Chen; Didier Y R Stainier
Journal:  Development       Date:  2005-10-26       Impact factor: 6.868

5.  The functional significance of the cardiac jelly in the tubular heart of the chick embryo.

Authors:  A BARRY
Journal:  Anat Rec       Date:  1948-11

6.  Rapid 3D light-sheet microscopy with a tunable lens.

Authors:  Florian O Fahrbach; Fabian F Voigt; Benjamin Schmid; Fritjof Helmchen; Jan Huisken
Journal:  Opt Express       Date:  2013-09-09       Impact factor: 3.894

7.  Optical control of zebrafish behavior with halorhodopsin.

Authors:  Aristides B Arrenberg; Filippo Del Bene; Herwig Baier
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-02       Impact factor: 11.205

8.  Blood flow dynamics of one cardiac cycle and relationship to mechanotransduction and trabeculation during heart looping.

Authors:  Barbara Garita; Michael W Jenkins; Mingda Han; Chao Zhou; Michael Vanauker; Andrew M Rollins; Michiko Watanabe; J G Fujimoto; Kersti K Linask
Journal:  Am J Physiol Heart Circ Physiol       Date:  2011-01-14       Impact factor: 4.733

9.  High-resolution imaging of cardiomyocyte behavior reveals two distinct steps in ventricular trabeculation.

Authors:  David W Staudt; Jiandong Liu; Kurt S Thorn; Nico Stuurman; Michael Liebling; Didier Y R Stainier
Journal:  Development       Date:  2014-01-08       Impact factor: 6.868

10.  4D reconstruction of the beating embryonic heart from two orthogonal sets of parallel optical coherence tomography slice-sequences.

Authors:  Sandeep Bhat; Irina V Larina; Kirill V Larin; Mary E Dickinson; Michael Liebling
Journal:  IEEE Trans Med Imaging       Date:  2012-12-04       Impact factor: 10.048
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  65 in total

1.  Whole-animal functional and developmental imaging with isotropic spatial resolution.

Authors:  Raghav K Chhetri; Fernando Amat; Yinan Wan; Burkhard Höckendorf; William C Lemon; Philipp J Keller
Journal:  Nat Methods       Date:  2015-10-26       Impact factor: 28.547

2.  A simple automated method for continuous fieldwise measurement of microvascular hemodynamics.

Authors:  Sherry G Clendenon; Xiao Fu; Robert A Von Hoene; Jeffrey L Clendenon; James P Sluka; Seth Winfree; Henry Mang; Michelle Martinez; Adele J Filson; James E Klaunig; James A Glazier; Kenneth W Dunn
Journal:  Microvasc Res       Date:  2018-11-28       Impact factor: 3.514

3.  Using Stage- and Slit-Scanning to Improve Contrast and Optical Sectioning in Dual-View Inverted Light Sheet Microscopy (diSPIM).

Authors:  Abhishek Kumar; Ryan Christensen; Min Guo; Panos Chandris; William Duncan; Yicong Wu; Anthony Santella; Mark Moyle; Peter W Winter; Daniel Colón-Ramos; Zhirong Bao; Hari Shroff
Journal:  Biol Bull       Date:  2016-08       Impact factor: 1.818

4.  Dynamic structure and protein expression of the live embryonic heart captured by 2-photon light sheet microscopy and retrospective registration.

Authors:  Vikas Trivedi; Thai V Truong; Le A Trinh; Daniel B Holland; Michael Liebling; Scott E Fraser
Journal:  Biomed Opt Express       Date:  2015-05-11       Impact factor: 3.732

5.  ClearVolume: open-source live 3D visualization for light-sheet microscopy.

Authors:  Loic A Royer; Martin Weigert; Ulrik Günther; Nicola Maghelli; Florian Jug; Ivo F Sbalzarini; Eugene W Myers
Journal:  Nat Methods       Date:  2015-06       Impact factor: 28.547

6.  Contractile and hemodynamic forces coordinate Notch1b-mediated outflow tract valve formation.

Authors:  Jeffrey J Hsu; Vijay Vedula; Kyung In Baek; Cynthia Chen; Junjie Chen; Man In Chou; Jeffrey Lam; Shivani Subhedar; Jennifer Wang; Yichen Ding; Chih-Chiang Chang; Juhyun Lee; Linda L Demer; Yin Tintut; Alison L Marsden; Tzung K Hsiai
Journal:  JCI Insight       Date:  2019-04-11

Review 7.  Light sheet approaches for improved precision in 3D localization-based super-resolution imaging in mammalian cells [Invited].

Authors:  Anna-Karin Gustavsson; Petar N Petrov; W E Moerner
Journal:  Opt Express       Date:  2018-05-14       Impact factor: 3.894

8.  Spatial and temporal variations in hemodynamic forces initiate cardiac trabeculation.

Authors:  Juhyun Lee; Vijay Vedula; Kyung In Baek; Junjie Chen; Jeffrey J Hsu; Yichen Ding; Chih-Chiang Chang; Hanul Kang; Adam Small; Peng Fei; Cheng-Ming Chuong; Rongsong Li; Linda Demer; René R Sevag Packard; Alison L Marsden; Tzung K Hsiai
Journal:  JCI Insight       Date:  2018-07-12

9.  Visualizing Surface T-Cell Receptor Dynamics Four-Dimensionally Using Lattice Light-Sheet Microscopy.

Authors:  Jillian Rosenberg; Jun Huang
Journal:  J Vis Exp       Date:  2020-01-30       Impact factor: 1.355

Review 10.  Advanced microscopy to elucidate cardiovascular injury and regeneration: 4D light-sheet imaging.

Authors:  Kyung In Baek; Yichen Ding; Chih-Chiang Chang; Megan Chang; René R Sevag Packard; Jeffrey J Hsu; Peng Fei; Tzung K Hsiai
Journal:  Prog Biophys Mol Biol       Date:  2018-05-09       Impact factor: 3.667
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