Literature DB >> 30933127

Tilt-invariant scanned oblique plane illumination microscopy for large-scale volumetric imaging.

Manish Kumar, Yevgenia Kozorovitskiy.   

Abstract

This Letter presents the first demonstration of multi-tile stitching for large scale 3D imaging in single objective light-sheet microscopy. We show undistorted 3D imaging spanning complete zebrafish larvae and over 1  mm3 volumes for thick mouse brain sections. We use remote galvo scanning for light-sheet creation and develop a processing pipeline for 3D tiling across different axes. With the improved one photon (1p) tilt-invariant scanned oblique plane illumination (SOPi, /sōpī/) microscope presented here, we demonstrate cellular resolution imaging at depths exceeding 330 μm in optically scattering mouse brain samples and dendritic imaging in more superficial layers.

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Year:  2019        PMID： 30933127      PMCID： PMC7263705          DOI： 10.1364/OL.44.001706

Source DB:  PubMed          Journal:  Opt Lett        ISSN： 0146-9592            Impact factor:   3.776


  17 in total

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2.  Aberration-free optical refocusing in high numerical aperture microscopy.

Authors:  Edward J Botcherby; Rimas Juskaitis; Martin J Booth; Tony Wilson
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3.  Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy.

Authors:  Philipp J Keller; Annette D Schmidt; Joachim Wittbrodt; Ernst H K Stelzer
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Authors:  Tobias Pietzsch; Stephan Saalfeld; Stephan Preibisch; Pavel Tomancak
Journal:  Nat Methods       Date:  2015-06       Impact factor: 28.547

Review 5.  A guide to light-sheet fluorescence microscopy for multiscale imaging.

Authors:  Rory M Power; Jan Huisken
Journal:  Nat Methods       Date:  2017-03-31       Impact factor: 28.547

6.  Integrated one- and two-photon scanned oblique plane illumination (SOPi) microscopy for rapid volumetric imaging.

Authors:  Manish Kumar; Sandeep Kishore; Jordan Nasenbeny; David L McLean; Yevgenia Kozorovitskiy
Journal:  Opt Express       Date:  2018-05-14       Impact factor: 3.894

7.  OpenSPIM: an open-access light-sheet microscopy platform.

Authors:  Peter G Pitrone; Johannes Schindelin; Luke Stuyvenberg; Stephan Preibisch; Michael Weber; Kevin W Eliceiri; Jan Huisken; Pavel Tomancak
Journal:  Nat Methods       Date:  2013-06-09       Impact factor: 28.547

8.  Globally optimal stitching of tiled 3D microscopic image acquisitions.

Authors:  Stephan Preibisch; Stephan Saalfeld; Pavel Tomancak
Journal:  Bioinformatics       Date:  2009-04-03       Impact factor: 6.937

9.  Swept confocally-aligned planar excitation (SCAPE) microscopy for high speed volumetric imaging of behaving organisms.

Authors:  Matthew B Bouchard; Venkatakaushik Voleti; César S Mendes; Clay Lacefield; Wesley B Grueber; Richard S Mann; Randy M Bruno; Elizabeth M C Hillman
Journal:  Nat Photonics       Date:  2015-02       Impact factor: 38.771

10.  High speed sCMOS-based oblique plane microscopy applied to the study of calcium dynamics in cardiac myocytes.

Authors:  Markus B Sikkel; Sunil Kumar; Vincent Maioli; Christina Rowlands; Fabiana Gordon; Sian E Harding; Alexander R Lyon; Kenneth T MacLeod; Chris Dunsby
Journal:  J Biophotonics       Date:  2015-10-21       Impact factor: 3.207
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  8 in total

1.  Single-objective high-resolution confocal light sheet fluorescence microscopy for standard biological sample geometries.

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Journal:  Biomed Opt Express       Date:  2021-05-14       Impact factor: 3.732

2.  FCE-Net: a fast image contrast enhancement method based on deep learning for biomedical optical images.

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3.  SOLEIL: single-objective lens inclined light sheet localization microscopy.

Authors:  Shih-Te Hung; Jelmer Cnossen; Daniel Fan; Marijn Siemons; Daphne Jurriens; Kristin Grußmayer; Oleg Soloviev; Lukas C Kapitein; Carlas S Smith
Journal:  Biomed Opt Express       Date:  2022-05-10       Impact factor: 3.562

4.  Depth random-access two-photon Bessel light-sheet imaging in brain tissue.

Authors:  Dongli Xu; Jun B Ding; Leilei Peng
Journal:  Opt Express       Date:  2022-07-18       Impact factor: 3.833

5.  Wide field-of-view volumetric imaging by a mesoscopic scanning oblique plane microscopy with switchable objective lenses.

Authors:  Wenjun Shao; Kivilcim Kilic; Wenqing Yin; Gregory Wirak; Xiaodan Qin; Hui Feng; David Boas; Christopher V Gabel; Ji Yi
Journal:  Quant Imaging Med Surg       Date:  2021-03

6.  Noninvasive and Noncontact Sequential Imaging of the Iridocorneal Angle and the Cornea of the Eye.

Authors:  Xun Jie Jeesmond Hong; C S Suchand Sandeep; V K Shinoj; Tin Aung; Veluchamy Amutha Barathi; Mani Baskaran; Vadakke Matham Murukeshan
Journal:  Transl Vis Sci Technol       Date:  2020-04-09       Impact factor: 3.283

7.  DaXi-high-resolution, large imaging volume and multi-view single-objective light-sheet microscopy.

Authors:  Bin Yang; Merlin Lange; Alfred Millett-Sikking; Xiang Zhao; Jordão Bragantini; Shruthi VijayKumar; Mason Kamb; Rafael Gómez-Sjöberg; Ahmet Can Solak; Wanpeng Wang; Hirofumi Kobayashi; Matthew N McCarroll; Lachlan W Whitehead; Reto P Fiolka; Thomas B Kornberg; Andrew G York; Loic A Royer
Journal:  Nat Methods       Date:  2022-03-21       Impact factor: 28.547

8.  A near-infrared genetically encoded calcium indicator for in vivo imaging.

Authors:  Anton A Shemetov; Mikhail V Monakhov; Qinrong Zhang; Jose Ernesto Canton-Josh; Manish Kumar; Maomao Chen; Mikhail E Matlashov; Xuan Li; Wei Yang; Liming Nie; Daria M Shcherbakova; Yevgenia Kozorovitskiy; Junjie Yao; Na Ji; Vladislav V Verkhusha
Journal:  Nat Biotechnol       Date:  2020-10-26       Impact factor: 54.908
  8 in total

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