Literature DB >> 25962980

Chemical Interactions of Polyethylene Glycols (PEGs) and Glycerol with Protein Functional Groups: Applications to Effects of PEG and Glycerol on Protein Processes.

D B Knowles1, Irina A Shkel1, Noel M Phan1, Matt Sternke1, Emily Lingeman1, Xian Cheng1, Lixue Cheng1, Kevin O'Connor1, M Thomas Record1.   

Abstract

In this work, we obtain the data needed to predict chemical interactions of polyethylene glycols (PEGs) and glycerol with proteins and related organic compounds and thereby interpret or predict chemical effects of PEGs on protein processes. To accomplish this, we determine interactions of glycerol and tetraEG with >30 model compounds displaying the major C, N, and O functional groups of proteins. Analysis of these data yields coefficients (α values) that quantify interactions of glycerol, tetraEG, and PEG end (-CH2OH) and interior (-CH2OCH2-) groups with these groups, relative to interactions with water. TetraEG (strongly) and glycerol (weakly) interact favorably with aromatic C, amide N, and cationic N, but unfavorably with amide O, carboxylate O, and salt ions. Strongly unfavorable O and salt anion interactions help make both small and large PEGs effective protein precipitants. Interactions of tetraEG and PEG interior groups with aliphatic C are quite favorable, while interactions of glycerol and PEG end groups with aliphatic C are not. Hence, tetraEG and PEG300 favor unfolding of the DNA-binding domain of lac repressor (lacDBD), while glycerol and di- and monoethylene glycol are stabilizers. Favorable interactions with aromatic and aliphatic C explain why PEG400 greatly increases the solubility of aromatic hydrocarbons and steroids. PEG400-steroid interactions are unusually favorable, presumably because of simultaneous interactions of multiple PEG interior groups with the fused ring system of the steroid. Using α values reported here, chemical contributions to PEG m-values can be predicted or interpreted in terms of changes in water-accessible surface area (ΔASA) and separated from excluded volume effects.

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Year:  2015        PMID: 25962980      PMCID: PMC4464906          DOI: 10.1021/acs.biochem.5b00246

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  56 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

2.  Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature.

Authors:  Oleg V Tsodikov; M Thomas Record; Yuri V Sergeev
Journal:  J Comput Chem       Date:  2002-04-30       Impact factor: 3.376

Review 3.  Interpreting the effects of small uncharged solutes on protein-folding equilibria.

Authors:  P R Davis-Searles; A J Saunders; D A Erie; D J Winzor; G J Pielak
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001

4.  Thermal and urea-induced unfolding of the marginally stable lac repressor DNA-binding domain: a model system for analysis of solute effects on protein processes.

Authors:  Daniel J Felitsky; M Thomas Record
Journal:  Biochemistry       Date:  2003-02-25       Impact factor: 3.162

5.  Protein-solvent preferential interactions, protein hydration, and the modulation of biochemical reactions by solvent components.

Authors:  Serge N Timasheff
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-03       Impact factor: 11.205

6.  Controlling biomolecular crystallization by understanding the distinct effects of PEGs and salts on solubility.

Authors:  Stéphanie Finet; Denis Vivarès; Françoise Bonneté; Annette Tardieu
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

Review 7.  Solubilizing excipients in oral and injectable formulations.

Authors:  Robert G Strickley
Journal:  Pharm Res       Date:  2004-02       Impact factor: 4.200

8.  Increased thermal stability of proteins in the presence of sugars and polyols.

Authors:  J F Back; D Oakenfull; M B Smith
Journal:  Biochemistry       Date:  1979-11-13       Impact factor: 3.162

Review 9.  Polyethyleneglycols and immunocamouflage of the cells tissues and organs for transplantation.

Authors:  M Eugene
Journal:  Cell Mol Biol (Noisy-le-grand)       Date:  2004-05       Impact factor: 1.770

10.  The effect of macromolecular crowding on protein aggregation and amyloid fibril formation.

Authors:  Larissa A Munishkina; Elisa M Cooper; Vladimir N Uversky; Anthony L Fink
Journal:  J Mol Recognit       Date:  2004 Sep-Oct       Impact factor: 2.137

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  29 in total

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Authors:  Alex J Guseman; Gerardo M Perez Goncalves; Shannon L Speer; Gregory B Young; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-09       Impact factor: 11.205

2.  Isotonic concentrations of excipients control the dimerization rate of a therapeutic immunoglobulin G1 antibody during refrigerated storage based on their rank order of native-state interaction.

Authors:  Douglas D Banks; Jon F Cordia; Vladimir Spasojevic; Jeonghoon Sun; Sarah Franc; Younhee Cho
Journal:  Protein Sci       Date:  2018-12       Impact factor: 6.725

3.  Molecular Effects of Concentrated Solutes on Protein Hydration, Dynamics, and Electrostatics.

Authors:  Luciano A Abriata; Enrico Spiga; Matteo Dal Peraro
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

4.  Consistent View of Polypeptide Chain Expansion in Chemical Denaturants from Multiple Experimental Methods.

Authors:  Alessandro Borgia; Wenwei Zheng; Karin Buholzer; Madeleine B Borgia; Anja Schüler; Hagen Hofmann; Andrea Soranno; Daniel Nettels; Klaus Gast; Alexander Grishaev; Robert B Best; Benjamin Schuler
Journal:  J Am Chem Soc       Date:  2016-09-01       Impact factor: 15.419

5.  Separating chemical and excluded volume interactions of polyethylene glycols with native proteins: Comparison with PEG effects on DNA helix formation.

Authors:  Irina A Shkel; D B Knowles; M Thomas Record
Journal:  Biopolymers       Date:  2015-09       Impact factor: 2.505

6.  The mechanism and high-free-energy transition state of lac repressor-lac operator interaction.

Authors:  Rituparna Sengupta; Michael W Capp; Irina A Shkel; M Thomas Record
Journal:  Nucleic Acids Res       Date:  2017-12-15       Impact factor: 16.971

7.  Quantifying Interactions of Nucleobase Atoms with Model Compounds for the Peptide Backbone and Glutamine and Asparagine Side Chains in Water.

Authors:  Xian Cheng; Irina A Shkel; Cristen Molzahn; David Lambert; Rezwana Karim; M Thomas Record
Journal:  Biochemistry       Date:  2018-04-05       Impact factor: 3.162

8.  In Vivo Titration of Folate Pathway Enzymes.

Authors:  Deepika Nambiar; Timkhite-Kulu Berhane; Robert Shew; Bryan Schwarz; Michael R Duff; Elizabeth E Howell
Journal:  Appl Environ Microbiol       Date:  2018-09-17       Impact factor: 4.792

Review 9.  Macromolecular Crowding In Vitro, In Vivo, and In Between.

Authors:  Germán Rivas; Allen P Minton
Journal:  Trends Biochem Sci       Date:  2016-09-23       Impact factor: 13.807

10.  Improvements in the production of purified M13 bacteriophage bio-nanoparticle.

Authors:  Paolo Passaretti; Inam Khan; Timothy R Dafforn; Pola Goldberg Oppenheimer
Journal:  Sci Rep       Date:  2020-10-29       Impact factor: 4.379

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