Literature DB >> 10760270

Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives.

V A Parsegian1, R P Rand, D C Rau.   

Abstract

There has been much confusion recently about the relative merits of different approaches, osmotic stress, preferential interaction, and crowding, to describe the indirect effect of solutes on macromolecular conformations and reactions. To strengthen all interpretations of measurements and to forestall further unnecessary conceptual or linguistic confusion, we show here how the different perspectives all can be reconciled. Our approach is through the Gibbs-Duhem relation, the universal constraint on the number of ways it is possible to change the temperature, pressure, and chemical potentials of the several components in any thermodynamically defined system. From this general Gibbs-Duhem equation, it is possible to see the equivalence of the different perspectives and even to show the precise identity of the more specialized equations that the different approaches use.

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Year:  2000        PMID: 10760270      PMCID: PMC18129          DOI: 10.1073/pnas.97.8.3987

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  Removing water from an EcoRI-noncognate DNA complex with osmotic stress.

Authors:  N Y Sidorova; D C Rau
Journal:  J Biomol Struct Dyn       Date:  1999-08

2.  Probing protein hydration and conformational states in solution.

Authors:  C Reid; R P Rand
Journal:  Biophys J       Date:  1997-03       Impact factor: 4.033

Review 3.  Molecular crowding: analysis of effects of high concentrations of inert cosolutes on biochemical equilibria and rates in terms of volume exclusion.

Authors:  A P Minton
Journal:  Methods Enzymol       Date:  1998       Impact factor: 1.600

4.  In disperse solution, "osmotic stress" is a restricted case of preferential interactions.

Authors:  S N Timasheff
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-23       Impact factor: 11.205

Review 5.  Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts.

Authors:  M T Record; W Zhang; C F Anderson
Journal:  Adv Protein Chem       Date:  1998

6.  Differences in water release for the binding of EcoRI to specific and nonspecific DNA sequences.

Authors:  N Y Sidorova; D C Rau
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-29       Impact factor: 11.205

7.  Macromolecules and water: probing with osmotic stress.

Authors:  V A Parsegian; R P Rand; D C Rau
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

8.  Thermodynamic nonideality of enzyme solutions supplemented with inert solutes: yeast hexokinase revisited.

Authors:  D J Winzor; P R Wills
Journal:  Biophys Chem       Date:  1995-12       Impact factor: 2.352

9.  Stabilization of protein structure by sugars.

Authors:  T Arakawa; S N Timasheff
Journal:  Biochemistry       Date:  1982-12-07       Impact factor: 3.162

10.  The B form to Z form transition of poly(dG-m5dC) is sensitive to neutral solutes through an osmotic stress.

Authors:  R S Preisler; H H Chen; M F Colombo; Y Choe; B J Short; D C Rau
Journal:  Biochemistry       Date:  1995-11-07       Impact factor: 3.162

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  116 in total

1.  Assessing accumulated solvent near a macromolecular solute by preferential interaction coefficients.

Authors:  Karen E S Tang; Victor A Bloomfield
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

2.  Macromolecular crowding tunes 3D collagen architecture and cell morphogenesis.

Authors:  S K Ranamukhaarachchi; R N Modi; A Han; D O Velez; A Kumar; A J Engler; S I Fraley
Journal:  Biomater Sci       Date:  2019-01-29       Impact factor: 6.843

3.  Protein-solvent preferential interactions, protein hydration, and the modulation of biochemical reactions by solvent components.

Authors:  Serge N Timasheff
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-03       Impact factor: 11.205

4.  Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments.

Authors:  Seishi Shimizu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-19       Impact factor: 11.205

5.  The role of hydration on the mechanism of allosteric regulation: in situ measurements of the oxygen-linked kinetics of water binding to hemoglobin.

Authors:  Andrés G Salvay; J Raúl Grigera; Marcio F Colombo
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

Review 6.  The influence of cell volume changes on tumour cell proliferation.

Authors:  Jean-Marc Dubois; Béatrice Rouzaire-Dubois
Journal:  Eur Biophys J       Date:  2003-11-04       Impact factor: 1.733

7.  Comparison of the effects of surface tension and osmotic pressure on the interfacial hydration of a fluid phospholipid bilayer.

Authors:  Tim Söderlund; Juha-Matti I Alakoskela; Antti L Pakkanen; Paavo K J Kinnunen
Journal:  Biophys J       Date:  2003-10       Impact factor: 4.033

8.  Differences between EcoRI nonspecific and "star" sequence complexes revealed by osmotic stress.

Authors:  Nina Y Sidorova; Donald C Rau
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

9.  In Vivo Titration of Folate Pathway Enzymes.

Authors:  Deepika Nambiar; Timkhite-Kulu Berhane; Robert Shew; Bryan Schwarz; Michael R Duff; Elizabeth E Howell
Journal:  Appl Environ Microbiol       Date:  2018-09-17       Impact factor: 4.792

10.  Using single-turnover kinetics with osmotic stress to characterize the EcoRV cleavage reaction.

Authors:  Rocco Ferrandino; Nina Sidorova; Donald Rau
Journal:  Biochemistry       Date:  2013-12-20       Impact factor: 3.162

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