Literature DB >> 25942753

Nuclear bodies: the emerging biophysics of nucleoplasmic phases.

Lian Zhu1, Clifford P Brangwynne2.   

Abstract

The cell nucleus contains a large number of membrane-less bodies that play important roles in the spatiotemporal regulation of gene expression. Recent work suggests that low complexity/disordered protein motifs and repetitive binding domains drive assembly of droplets of nuclear RNA/protein by promoting nucleoplasmic phase separation. Nucleation and maturation of these structures is regulated by, and may in turn affect, factors including post-translational modifications, protein concentration, transcriptional activity, and chromatin state. Here we present a concise review of these exciting recent advances, and discuss current and future challenges in understanding the assembly, regulation, and function of nuclear RNA/protein bodies.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 25942753      PMCID: PMC5562147          DOI: 10.1016/j.ceb.2015.04.003

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  56 in total

Review 1.  Getting RNA and protein in phase.

Authors:  Stephanie C Weber; Clifford P Brangwynne
Journal:  Cell       Date:  2012-06-08       Impact factor: 41.582

2.  De novo formation of a subnuclear body.

Authors:  Trish E Kaiser; Robert V Intine; Miroslav Dundr
Journal:  Science       Date:  2008-10-23       Impact factor: 47.728

Review 3.  Liquid-liquid phase separation in biology.

Authors:  Anthony A Hyman; Christoph A Weber; Frank Jülicher
Journal:  Annu Rev Cell Dev Biol       Date:  2014       Impact factor: 13.827

4.  Inverse size scaling of the nucleolus by a concentration-dependent phase transition.

Authors:  Stephanie C Weber; Clifford P Brangwynne
Journal:  Curr Biol       Date:  2015-02-19       Impact factor: 10.834

Review 5.  RNA-binding proteins with prion-like domains in ALS and FTLD-U.

Authors:  Aaron D Gitler; James Shorter
Journal:  Prion       Date:  2011-07-01       Impact factor: 3.931

6.  Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.

Authors:  Alfredo Castello; Bernd Fischer; Katrin Eichelbaum; Rastislav Horos; Benedikt M Beckmann; Claudia Strein; Norman E Davey; David T Humphreys; Thomas Preiss; Lars M Steinmetz; Jeroen Krijgsveld; Matthias W Hentze
Journal:  Cell       Date:  2012-05-31       Impact factor: 41.582

7.  Intrinsic disorder in the human spliceosomal proteome.

Authors:  Iga Korneta; Janusz M Bujnicki
Journal:  PLoS Comput Biol       Date:  2012-08-09       Impact factor: 4.475

8.  Construction of synthetic nucleoli in human cells reveals how a major functional nuclear domain is formed and propagated through cell division.

Authors:  Alice Grob; Christine Colleran; Brian McStay
Journal:  Genes Dev       Date:  2014-01-21       Impact factor: 11.361

9.  Glutamine methylation in histone H2A is an RNA-polymerase-I-dedicated modification.

Authors:  Peter Tessarz; Helena Santos-Rosa; Sam C Robson; Kathrine B Sylvestersen; Christopher J Nelson; Michael L Nielsen; Tony Kouzarides
Journal:  Nature       Date:  2013-12-18       Impact factor: 49.962

Review 10.  Assemblages: functional units formed by cellular phase separation.

Authors:  Jeffrey A Toretsky; Peter E Wright
Journal:  J Cell Biol       Date:  2014-09-01       Impact factor: 10.539

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  105 in total

Review 1.  The diffusive way out: Herpesviruses remodel the host nucleus, enabling capsids to access the inner nuclear membrane.

Authors:  Jens B Bosse; Lynn W Enquist
Journal:  Nucleus       Date:  2016-02-18       Impact factor: 4.197

2.  Liquid Nuclear Condensates Mechanically Sense and Restructure the Genome.

Authors:  Yongdae Shin; Yi-Che Chang; Daniel S W Lee; Joel Berry; David W Sanders; Pierre Ronceray; Ned S Wingreen; Mikko Haataja; Clifford P Brangwynne
Journal:  Cell       Date:  2018-11-29       Impact factor: 41.582

3.  Mapping Local and Global Liquid Phase Behavior in Living Cells Using Photo-Oligomerizable Seeds.

Authors:  Dan Bracha; Mackenzie T Walls; Ming-Tzo Wei; Lian Zhu; Martin Kurian; José L Avalos; Jared E Toettcher; Clifford P Brangwynne
Journal:  Cell       Date:  2018-11-29       Impact factor: 41.582

4.  Phase separation drives heterochromatin domain formation.

Authors:  Amy R Strom; Alexander V Emelyanov; Mustafa Mir; Dmitry V Fyodorov; Xavier Darzacq; Gary H Karpen
Journal:  Nature       Date:  2017-06-21       Impact factor: 49.962

5.  Amyotrophic lateral sclerosis-linked mutations increase the viscosity of liquid-like TDP-43 RNP granules in neurons.

Authors:  Pallavi P Gopal; Jeffrey J Nirschl; Eva Klinman; Erika L F Holzbaur
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

6.  Controlling the material properties and rRNA processing function of the nucleolus using light.

Authors:  Lian Zhu; Tiffany M Richardson; Ludivine Wacheul; Ming-Tzo Wei; Marina Feric; Gena Whitney; Denis L J Lafontaine; Clifford P Brangwynne
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-09       Impact factor: 11.205

7.  Nuclear speckle fusion via long-range directional motion regulates speckle morphology after transcriptional inhibition.

Authors:  Jiah Kim; Kyu Young Han; Nimish Khanna; Taekjip Ha; Andrew S Belmont
Journal:  J Cell Sci       Date:  2019-04-17       Impact factor: 5.285

8.  53BP1-DNA repair enters a new liquid phase.

Authors:  Rossana Piccinno; Vera Minneker; Vassilis Roukos
Journal:  EMBO J       Date:  2019-07-29       Impact factor: 11.598

Review 9.  More than Just a Phase: Prions at the Crossroads of Epigenetic Inheritance and Evolutionary Change.

Authors:  Anupam K Chakravarty; Daniel F Jarosz
Journal:  J Mol Biol       Date:  2018-07-19       Impact factor: 5.469

Review 10.  The Cajal body and the nucleolus: "In a relationship" or "It's complicated"?

Authors:  Laura Trinkle-Mulcahy; Judith E Sleeman
Journal:  RNA Biol       Date:  2016-09-23       Impact factor: 4.652

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