Literature DB >> 31399547

Controlling the material properties and rRNA processing function of the nucleolus using light.

Lian Zhu1, Tiffany M Richardson2, Ludivine Wacheul3, Ming-Tzo Wei1, Marina Feric1, Gena Whitney1, Denis L J Lafontaine3, Clifford P Brangwynne4,5.   

Abstract

The nucleolus is a prominent nuclear condensate that plays a central role in ribosome biogenesis by facilitating the transcription and processing of nascent ribosomal RNA (rRNA). A number of studies have highlighted the active viscoelastic nature of the nucleolus, whose material properties and phase behavior are a consequence of underlying molecular interactions. However, the ways in which the material properties of the nucleolus impact its function in rRNA biogenesis are not understood. Here we utilize the Cry2olig optogenetic system to modulate the viscoelastic properties of the nucleolus. We show that above a threshold concentration of Cry2olig protein, the nucleolus can be gelled into a tightly linked, low mobility meshwork. Gelled nucleoli no longer coalesce and relax into spheres but nonetheless permit continued internal molecular mobility of small proteins. These changes in nucleolar material properties manifest in specific alterations in rRNA processing steps, including a buildup of larger rRNA precursors and a depletion of smaller rRNA precursors. We propose that the flux of processed rRNA may be actively tuned by the cell through modulating nucleolar material properties, which suggests the potential of materials-based approaches for therapeutic intervention in ribosomopathies.

Keywords:  condensate; liquid–liquid phase separation; material properties; nucleolus; transcription

Mesh:

Substances:

Year:  2019        PMID: 31399547      PMCID: PMC6717270          DOI: 10.1073/pnas.1903870116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  51 in total

1.  High mobility of proteins in the mammalian cell nucleus.

Authors:  R D Phair; T Misteli
Journal:  Nature       Date:  2000-04-06       Impact factor: 49.962

Review 2.  Regulation of ribosome biogenesis within the nucleolus.

Authors:  D J Leary; S Huang
Journal:  FEBS Lett       Date:  2001-12-07       Impact factor: 4.124

3.  Effective charges of colloidal particles obtained from collective diffusion experiments.

Authors:  M Tirado-Miranda; C Haro-Pérez; M Quesada-Pérez; J Callejas-Fernández; R Hidalgo-Alvarez
Journal:  J Colloid Interface Sci       Date:  2003-07-01       Impact factor: 8.128

4.  Fusion of nucleoli in cells cultured from the heart of Triturus viridescens.

Authors:  P S AMENTA
Journal:  Anat Rec       Date:  1961-02

5.  The hydrodynamic radii of macromolecules and their effect on red blood cell aggregation.

Authors:  J K Armstrong; R B Wenby; H J Meiselman; T C Fisher
Journal:  Biophys J       Date:  2004-09-10       Impact factor: 4.033

Review 6.  The nucleolus.

Authors:  Thoru Pederson
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-03-01       Impact factor: 10.005

Review 7.  The multifunctional nucleolus.

Authors:  François-Michel Boisvert; Silvana van Koningsbruggen; Joaquín Navascués; Angus I Lamond
Journal:  Nat Rev Mol Cell Biol       Date:  2007-07       Impact factor: 94.444

Review 8.  Ribosomopathies: human disorders of ribosome dysfunction.

Authors:  Anupama Narla; Benjamin L Ebert
Journal:  Blood       Date:  2010-03-01       Impact factor: 22.113

9.  Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes.

Authors:  Clifford P Brangwynne; Timothy J Mitchison; Anthony A Hyman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-28       Impact factor: 11.205

10.  Cajal bodies, nucleoli, and speckles in the Xenopus oocyte nucleus have a low-density, sponge-like structure.

Authors:  Korie E Handwerger; Jason A Cordero; Joseph G Gall
Journal:  Mol Biol Cell       Date:  2004-10-27       Impact factor: 4.138

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  22 in total

1.  Quantifying Dynamics in Phase-Separated Condensates Using Fluorescence Recovery after Photobleaching.

Authors:  Nicole O Taylor; Ming-Tzo Wei; Howard A Stone; Clifford P Brangwynne
Journal:  Biophys J       Date:  2019-08-30       Impact factor: 4.033

2.  Composition-dependent thermodynamics of intracellular phase separation.

Authors:  Joshua A Riback; Lian Zhu; Mylene C Ferrolino; Michele Tolbert; Diana M Mitrea; David W Sanders; Ming-Tzo Wei; Richard W Kriwacki; Clifford P Brangwynne
Journal:  Nature       Date:  2020-05-06       Impact factor: 49.962

Review 3.  Liquid-liquid phase separation as an organizing principle of intracellular space: overview of the evolution of the cell compartmentalization concept.

Authors:  Iuliia A Antifeeva; Alexander V Fonin; Anna S Fefilova; Olesya V Stepanenko; Olga I Povarova; Sergey A Silonov; Irina M Kuznetsova; Vladimir N Uversky; Konstantin K Turoverov
Journal:  Cell Mol Life Sci       Date:  2022-04-20       Impact factor: 9.261

4.  An Optogenetic Toolkit for the Control of Phase Separation in Living Cells.

Authors:  Chaelim Kim; Yongdae Shin
Journal:  Methods Mol Biol       Date:  2023

5.  Function moves biomolecular condensates in phase space.

Authors:  Marina Feric; Tom Misteli
Journal:  Bioessays       Date:  2022-03-03       Impact factor: 4.653

Review 6.  Probing and engineering liquid-phase organelles.

Authors:  Dan Bracha; Mackenzie T Walls; Clifford P Brangwynne
Journal:  Nat Biotechnol       Date:  2019-12-02       Impact factor: 54.908

Review 7.  A framework for understanding the functions of biomolecular condensates across scales.

Authors:  Andrew S Lyon; William B Peeples; Michael K Rosen
Journal:  Nat Rev Mol Cell Biol       Date:  2020-11-09       Impact factor: 94.444

Review 8.  The nucleolus as a multiphase liquid condensate.

Authors:  Denis L J Lafontaine; Joshua A Riback; Rümeyza Bascetin; Clifford P Brangwynne
Journal:  Nat Rev Mol Cell Biol       Date:  2020-09-01       Impact factor: 94.444

Review 9.  Steering Molecular Activity with Optogenetics: Recent Advances and Perspectives.

Authors:  Teak-Jung Oh; Huaxun Fan; Savanna S Skeeters; Kai Zhang
Journal:  Adv Biol (Weinh)       Date:  2021-01-14

Review 10.  RNA modulates physiological and neuropathological protein phase transitions.

Authors:  Jacob R Mann; Christopher J Donnelly
Journal:  Neuron       Date:  2021-07-22       Impact factor: 18.688

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