Literature DB >> 30500534

Mapping Local and Global Liquid Phase Behavior in Living Cells Using Photo-Oligomerizable Seeds.

Dan Bracha1, Mackenzie T Walls1, Ming-Tzo Wei1, Lian Zhu1, Martin Kurian1, José L Avalos2, Jared E Toettcher3, Clifford P Brangwynne4.   

Abstract

Liquid-liquid phase separation plays a key role in the assembly of diverse intracellular structures. However, the biophysical principles by which phase separation can be precisely localized within subregions of the cell are still largely unclear, particularly for low-abundance proteins. Here, we introduce an oligomerizing biomimetic system, "Corelets," and utilize its rapid and quantitative light-controlled tunability to map full intracellular phase diagrams, which dictate the concentrations at which phase separation occurs and the transition mechanism, in a protein sequence dependent manner. Surprisingly, both experiments and simulations show that while intracellular concentrations may be insufficient for global phase separation, sequestering protein ligands to slowly diffusing nucleation centers can move the cell into a different region of the phase diagram, resulting in localized phase separation. This diffusive capture mechanism liberates the cell from the constraints of global protein abundance and is likely exploited to pattern condensates associated with diverse biological processes. VIDEO ABSTRACT.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  binodal; condensation; liquid-liquid phase separation; membraneless organelles; multivalent interactions; oligomerization; optogenetics; phase diagram; protein disorder; spinodal decomposition

Mesh:

Year:  2018        PMID: 30500534      PMCID: PMC6724719          DOI: 10.1016/j.cell.2018.10.048

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  45 in total

1.  Protein crystallization and phase diagrams.

Authors:  Neer Asherie
Journal:  Methods       Date:  2004-11       Impact factor: 3.608

Review 2.  Biogenesis of nuclear bodies.

Authors:  Miroslav Dundr; Tom Misteli
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-11-10       Impact factor: 10.005

3.  Binary-liquid phase separation of lens protein solutions.

Authors:  M L Broide; C R Berland; J Pande; O O Ogun; G B Benedek
Journal:  Proc Natl Acad Sci U S A       Date:  1991-07-01       Impact factor: 11.205

4.  Precise measurement of diffusion coefficients using scanning fluorescence correlation spectroscopy.

Authors:  Zdenek Petrásek; Petra Schwille
Journal:  Biophys J       Date:  2007-10-12       Impact factor: 4.033

5.  Tomographic phase microscopy.

Authors:  Wonshik Choi; Christopher Fang-Yen; Kamran Badizadegan; Seungeun Oh; Niyom Lue; Ramachandra R Dasari; Michael S Feld
Journal:  Nat Methods       Date:  2007-08-12       Impact factor: 28.547

6.  Germline P granules are liquid droplets that localize by controlled dissolution/condensation.

Authors:  Clifford P Brangwynne; Christian R Eckmann; David S Courson; Agata Rybarska; Carsten Hoege; Jöbin Gharakhani; Frank Jülicher; Anthony A Hyman
Journal:  Science       Date:  2009-05-21       Impact factor: 47.728

7.  Enzymatic assembly of DNA molecules up to several hundred kilobases.

Authors:  Daniel G Gibson; Lei Young; Ray-Yuan Chuang; J Craig Venter; Clyde A Hutchison; Hamilton O Smith
Journal:  Nat Methods       Date:  2009-04-12       Impact factor: 28.547

8.  Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes.

Authors:  Clifford P Brangwynne; Timothy J Mitchison; Anthony A Hyman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-28       Impact factor: 11.205

Review 9.  An introduction to critical points for biophysicists; observations of compositional heterogeneity in lipid membranes.

Authors:  Aurelia R Honerkamp-Smith; Sarah L Veatch; Sarah L Keller
Journal:  Biochim Biophys Acta       Date:  2008-10-01

10.  The RasGAP-associated endoribonuclease G3BP assembles stress granules.

Authors:  Helene Tourrière; Karim Chebli; Latifa Zekri; Brice Courselaud; Jean Marie Blanchard; Edouard Bertrand; Jamal Tazi
Journal:  J Cell Biol       Date:  2003-03-17       Impact factor: 10.539

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  100 in total

1.  Liquid Nuclear Condensates Mechanically Sense and Restructure the Genome.

Authors:  Yongdae Shin; Yi-Che Chang; Daniel S W Lee; Joel Berry; David W Sanders; Pierre Ronceray; Ned S Wingreen; Mikko Haataja; Clifford P Brangwynne
Journal:  Cell       Date:  2018-11-29       Impact factor: 41.582

2.  SPLIT: Stable Protein Coacervation Using a Light Induced Transition.

Authors:  Ellen H Reed; Benjamin S Schuster; Matthew C Good; Daniel A Hammer
Journal:  ACS Synth Biol       Date:  2020-02-28       Impact factor: 5.110

3.  Controlling the material properties and rRNA processing function of the nucleolus using light.

Authors:  Lian Zhu; Tiffany M Richardson; Ludivine Wacheul; Ming-Tzo Wei; Marina Feric; Gena Whitney; Denis L J Lafontaine; Clifford P Brangwynne
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-09       Impact factor: 11.205

Review 4.  Harnessing biomolecular condensates in living cells.

Authors:  Hideki Nakamura; Robert DeRose; Takanari Inoue
Journal:  J Biochem       Date:  2019-07-01       Impact factor: 3.387

5.  The zebrafish NLRP3 inflammasome has functional roles in ASC-dependent interleukin-1β maturation and gasdermin E-mediated pyroptosis.

Authors:  Jiang-Yuan Li; Yue-Yi Wang; Tong Shao; Dong-Dong Fan; Ai-Fu Lin; Li-Xin Xiang; Jian-Zhong Shao
Journal:  J Biol Chem       Date:  2019-12-18       Impact factor: 5.157

6.  Universal phase behaviors of intracellular lipid droplets.

Authors:  Shunsuke F Shimobayashi; Yuki Ohsaki
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-26       Impact factor: 11.205

7.  Liquid-liquid phase separation drives skin barrier formation.

Authors:  Felipe Garcia Quiroz; Vincent F Fiore; John Levorse; Lisa Polak; Ellen Wong; H Amalia Pasolli; Elaine Fuchs
Journal:  Science       Date:  2020-03-13       Impact factor: 47.728

Review 8.  Biomolecular Condensates in the Nucleus.

Authors:  Benjamin R Sabari; Alessandra Dall'Agnese; Richard A Young
Journal:  Trends Biochem Sci       Date:  2020-07-17       Impact factor: 13.807

Review 9.  Phase Separation in Germ Cells and Development.

Authors:  Anne E Dodson; Scott Kennedy
Journal:  Dev Cell       Date:  2020-10-01       Impact factor: 12.270

10.  Inhibition of Axon Regeneration by Liquid-like TIAR-2 Granules.

Authors:  Matthew G Andrusiak; Panid Sharifnia; Xiaohui Lyu; Zhiping Wang; Andrea M Dickey; Zilu Wu; Andrew D Chisholm; Yishi Jin
Journal:  Neuron       Date:  2019-08-01       Impact factor: 17.173

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