Literature DB >> 25601074

Structure, bioactivity, and resistance mechanism of streptomonomicin, an unusual lasso Peptide from an understudied halophilic actinomycete.

Mikhail Metelev1, Jonathan I Tietz2, Joel O Melby3, Patricia M Blair2, Lingyang Zhu4, Itamar Livnat2, Konstantin Severinov5, Douglas A Mitchell6.   

Abstract

Natural products are the most historically significant source of compounds for drug development. However, unacceptably high rates of compound rediscovery associated with large-scale screening of common microbial producers have resulted in the abandonment of many natural product drug discovery efforts, despite the increasing prevalence of clinically problematic antibiotic resistance. Screening of underexplored taxa represents one strategy to avoid rediscovery. Herein we report the discovery, isolation, and structural elucidation of streptomonomicin (STM), an antibiotic lasso peptide from Streptomonospora alba, and report the genome for its producing organism. STM-resistant clones of Bacillus anthracis harbor mutations to walR, the gene encoding a response regulator for the only known widely distributed and essential two-component signal transduction system in Firmicutes. To the best of our knowledge, Streptomonospora had been hitherto biosynthetically and genetically uncharacterized, with STM being the first reported compound from the genus. Our results demonstrate that understudied microbes remain fruitful reservoirs for the rapid discovery of novel, bioactive natural products.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 25601074      PMCID: PMC4336579          DOI: 10.1016/j.chembiol.2014.11.017

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  51 in total

1.  The Xplor-NIH NMR molecular structure determination package.

Authors:  Charles D Schwieters; John J Kuszewski; Nico Tjandra; G Marius Clore
Journal:  J Magn Reson       Date:  2003-01       Impact factor: 2.229

2.  High-resolution crystal structure of a lasso Peptide.

Authors:  Herbert Nar; Angela Schmid; Carsten Puder; Olivier Potterat
Journal:  ChemMedChem       Date:  2010-10-04       Impact factor: 3.466

3.  MS/MS networking guided analysis of molecule and gene cluster families.

Authors:  Don Duy Nguyen; Cheng-Hsuan Wu; Wilna J Moree; Anne Lamsa; Marnix H Medema; Xiling Zhao; Ronnie G Gavilan; Marystella Aparicio; Librada Atencio; Chanaye Jackson; Javier Ballesteros; Joel Sanchez; Jeramie D Watrous; Vanessa V Phelan; Corine van de Wiel; Roland D Kersten; Samina Mehnaz; René De Mot; Elizabeth A Shank; Pep Charusanti; Harish Nagarajan; Brendan M Duggan; Bradley S Moore; Nuno Bandeira; Bernhard Ø Palsson; Kit Pogliano; Marcelino Gutiérrez; Pieter C Dorrestein
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

4.  X-ray crystal structure of the DNA-binding domain of response regulator WalR essential to the cell viability of staphylococcus aureus and interaction with target DNA.

Authors:  Akihiro Doi; Toshihide Okajima; Yasuhiro Gotoh; Katsuyuki Tanizawa; Ryutaro Utsumi
Journal:  Biosci Biotechnol Biochem       Date:  2010-09-07       Impact factor: 2.043

5.  The antibacterial threaded-lasso peptide capistruin inhibits bacterial RNA polymerase.

Authors:  Konstantin Kuznedelov; Ekaterina Semenova; Thomas A Knappe; Damir Mukhamedyarov; Aashish Srivastava; Sujoy Chatterjee; Richard H Ebright; Mohamed A Marahiel; Konstantin Severinov
Journal:  J Mol Biol       Date:  2011-03-15       Impact factor: 5.469

6.  In-depth profiling of the LiaR response of Bacillus subtilis.

Authors:  Diana Wolf; Falk Kalamorz; Tina Wecke; Anna Juszczak; Ulrike Mäder; Georg Homuth; Sina Jordan; Janine Kirstein; Michael Hoppert; Birgit Voigt; Michael Hecker; Thorsten Mascher
Journal:  J Bacteriol       Date:  2010-07-16       Impact factor: 3.490

7.  Insights into the biosynthesis and stability of the lasso peptide capistruin.

Authors:  Thomas A Knappe; Uwe Linne; Lars Robbel; Mohamed A Marahiel
Journal:  Chem Biol       Date:  2009-12-24

8.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Authors:  Marnix H Medema; Kai Blin; Peter Cimermancic; Victor de Jager; Piotr Zakrzewski; Michael A Fischbach; Tilmann Weber; Eriko Takano; Rainer Breitling
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

9.  Arimetamycin A: improving clinically relevant families of natural products through sequence-guided screening of soil metagenomes.

Authors:  Hahk-Soo Kang; Sean F Brady
Journal:  Angew Chem Int Ed Engl       Date:  2013-09-03       Impact factor: 15.336

10.  Functional characterization of WalRK: A two-component signal transduction system from Bacillus anthracis.

Authors:  Alisha Dhiman; Sonika Bhatnagar; Parul Kulshreshtha; Rakesh Bhatnagar
Journal:  FEBS Open Bio       Date:  2014-01-02       Impact factor: 2.693

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  22 in total

1.  Heterologous and in Vitro Reconstitution of Fuscanodin, a Lasso Peptide from Thermobifida fusca.

Authors:  Joseph D Koos; A James Link
Journal:  J Am Chem Soc       Date:  2018-12-27       Impact factor: 15.419

2.  Heterologous production of a new lasso peptide brevunsin in Sphingomonas subterranea.

Authors:  Shinya Kodani; Hikaru Hemmi; Yuto Miyake; Issara Kaweewan; Hiroyuki Nakagawa
Journal:  J Ind Microbiol Biotechnol       Date:  2018-09-06       Impact factor: 3.346

3.  Isolation of a new antibacterial peptide achromosin from Streptomyces achromogenes subsp. achromogenes based on genome mining.

Authors:  Issara Kaweewan; Mayumi Ohnishi-Kameyama; Shinya Kodani
Journal:  J Antibiot (Tokyo)       Date:  2016-09-07       Impact factor: 2.649

Review 4.  How to harness biosynthetic gene clusters of lasso peptides.

Authors:  Shinya Kodani; Kohta Unno
Journal:  J Ind Microbiol Biotechnol       Date:  2020-07-23       Impact factor: 3.346

5.  Insights into the Unique Phosphorylation of the Lasso Peptide Paeninodin.

Authors:  Shaozhou Zhu; Julian D Hegemann; Christopher D Fage; Marcel Zimmermann; Xiulan Xie; Uwe Linne; Mohamed A Marahiel
Journal:  J Biol Chem       Date:  2016-05-05       Impact factor: 5.157

Review 6.  RiPP antibiotics: biosynthesis and engineering potential.

Authors:  Graham A Hudson; Douglas A Mitchell
Journal:  Curr Opin Microbiol       Date:  2018-03-10       Impact factor: 7.934

Review 7.  New Insights into the Biosynthetic Logic of Ribosomally Synthesized and Post-translationally Modified Peptide Natural Products.

Authors:  Manuel A Ortega; Wilfred A van der Donk
Journal:  Cell Chem Biol       Date:  2016-01-21       Impact factor: 8.116

8.  Elucidation of the roles of conserved residues in the biosynthesis of the lasso peptide paeninodin.

Authors:  Julian D Hegemann; Christopher J Schwalen; Douglas A Mitchell; Wilfred A van der Donk
Journal:  Chem Commun (Camb)       Date:  2018-07-26       Impact factor: 6.222

Review 9.  New developments in RiPP discovery, enzymology and engineering.

Authors:  Manuel Montalbán-López; Thomas A Scott; Sangeetha Ramesh; Imran R Rahman; Auke J van Heel; Jakob H Viel; Vahe Bandarian; Elke Dittmann; Olga Genilloud; Yuki Goto; María José Grande Burgos; Colin Hill; Seokhee Kim; Jesko Koehnke; John A Latham; A James Link; Beatriz Martínez; Satish K Nair; Yvain Nicolet; Sylvie Rebuffat; Hans-Georg Sahl; Dipti Sareen; Eric W Schmidt; Lutz Schmitt; Konstantin Severinov; Roderich D Süssmuth; Andrew W Truman; Huan Wang; Jing-Ke Weng; Gilles P van Wezel; Qi Zhang; Jin Zhong; Jörn Piel; Douglas A Mitchell; Oscar P Kuipers; Wilfred A van der Donk
Journal:  Nat Prod Rep       Date:  2020-09-16       Impact factor: 15.111

10.  A prevalent peptide-binding domain guides ribosomal natural product biosynthesis.

Authors:  Brandon J Burkhart; Graham A Hudson; Kyle L Dunbar; Douglas A Mitchell
Journal:  Nat Chem Biol       Date:  2015-07-13       Impact factor: 15.040

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