Literature DB >> 26933734

New Insights into the Biosynthetic Logic of Ribosomally Synthesized and Post-translationally Modified Peptide Natural Products.

Manuel A Ortega1, Wilfred A van der Donk2.   

Abstract

Ribosomally synthesized and post-translationally modified peptides (RiPPs) are a large group of structurally diverse natural products. Their biological activities and unique biosynthetic pathways have sparked a growing interest in RiPPs. Furthermore, the relatively low genetic complexity associated with RiPP biosynthesis makes them excellent candidates for synthetic biology applications. This Review highlights recent developments in the understanding of the biosynthesis of several bacterial RiPP family members, the use of the RiPP biosynthetic machinery for generating novel macrocyclic peptides, and the implementation of tools designed to guide the discovery and characterization of novel RiPPs.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 26933734      PMCID: PMC4779184          DOI: 10.1016/j.chembiol.2015.11.012

Source DB:  PubMed          Journal:  Cell Chem Biol        ISSN: 2451-9448            Impact factor:   8.116


  112 in total

1.  Genome mining reveals a minimum gene set for the biosynthesis of 32-membered macrocyclic thiopeptides lactazoles.

Authors:  Shohei Hayashi; Taro Ozaki; Shumpei Asamizu; Haruo Ikeda; Satoshi Ōmura; Naoya Oku; Yasuhiro Igarashi; Hiroshi Tomoda; Hiroyasu Onaka
Journal:  Chem Biol       Date:  2014-04-24

2.  Crystal structures of a polypeptide processing and secretion transporter.

Authors:  David Yin-wei Lin; Shuo Huang; Jue Chen
Journal:  Nature       Date:  2015-07-23       Impact factor: 49.962

3.  Lantibiotic Reductase LtnJ Substrate Selectivity Assessed with a Collection of Nisin Derivatives as Substrates.

Authors:  Dongdong Mu; Manuel Montalbán-López; Jingjing Deng; Oscar P Kuipers
Journal:  Appl Environ Microbiol       Date:  2015-03-20       Impact factor: 4.792

4.  Expanded natural product diversity revealed by analysis of lanthipeptide-like gene clusters in actinobacteria.

Authors:  Qi Zhang; James R Doroghazi; Xiling Zhao; Mark C Walker; Wilfred A van der Donk
Journal:  Appl Environ Microbiol       Date:  2015-04-17       Impact factor: 4.792

5.  Synergistic binding of the leader and core peptides by the lantibiotic synthetase HalM2.

Authors:  Gabrielle N Thibodeaux; Amanda L McClerren; Yunli Ma; Marc R Gancayco; Wilfred A van der Donk
Journal:  ACS Chem Biol       Date:  2015-02-04       Impact factor: 5.100

6.  Two [4Fe-4S] clusters containing radical SAM enzyme SkfB catalyze thioether bond formation during the maturation of the sporulation killing factor.

Authors:  Leif Flühe; Olaf Burghaus; Beata M Wieckowski; Tobias W Giessen; Uwe Linne; Mohamed A Marahiel
Journal:  J Am Chem Soc       Date:  2013-01-09       Impact factor: 15.419

7.  Thiopeptide Antibiotics Exhibit a Dual Mode of Action against Intracellular Pathogens by Affecting Both Host and Microbe.

Authors:  Qingfei Zheng; Qinglan Wang; Shoufeng Wang; Jiequn Wu; Qian Gao; Wen Liu
Journal:  Chem Biol       Date:  2015-07-23

8.  Lasso peptides from proteobacteria: Genome mining employing heterologous expression and mass spectrometry.

Authors:  Julian D Hegemann; Marcel Zimmermann; Shaozhou Zhu; Dennis Klug; Mohamed A Marahiel
Journal:  Biopolymers       Date:  2013-09       Impact factor: 2.505

9.  Substrate control in stereoselective lanthionine biosynthesis.

Authors:  Weixin Tang; Gonzalo Jiménez-Osés; K N Houk; Wilfred A van der Donk
Journal:  Nat Chem       Date:  2014-11-24       Impact factor: 24.427

Review 10.  Follow the leader: the use of leader peptides to guide natural product biosynthesis.

Authors:  Trent J Oman; Wilfred A van der Donk
Journal:  Nat Chem Biol       Date:  2010-01       Impact factor: 15.040

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  65 in total

Review 1.  Ribosomally synthesized and post-translationally modified peptide natural product discovery in the genomic era.

Authors:  Kenton J Hetrick; Wilfred A van der Donk
Journal:  Curr Opin Chem Biol       Date:  2017-03-02       Impact factor: 8.822

2.  Scytodecamide from the Cultured Scytonema sp. UIC 10036 Expands the Chemical and Genetic Diversity of Cyanobactins.

Authors:  Camila M Crnkovic; Jana Braesel; Aleksej Krunic; Alessandra S Eustáquio; Jimmy Orjala
Journal:  Chembiochem       Date:  2019-11-26       Impact factor: 3.164

3.  Enzymatic N- and C-Protection in Cyanobactin RiPP Natural Products.

Authors:  Debosmita Sardar; Yue Hao; Zhenjian Lin; Maho Morita; Satish K Nair; Eric W Schmidt
Journal:  J Am Chem Soc       Date:  2017-02-15       Impact factor: 15.419

Review 4.  Occurrence, function, and biosynthesis of mycofactocin.

Authors:  Richard Ayikpoe; Vishnu Govindarajan; John A Latham
Journal:  Appl Microbiol Biotechnol       Date:  2019-02-18       Impact factor: 4.813

Review 5.  Elucidating and engineering thiopeptide biosynthesis.

Authors:  Philip R Bennallack; Joel S Griffitts
Journal:  World J Microbiol Biotechnol       Date:  2017-05-11       Impact factor: 3.312

Review 6.  Mechanistic Understanding of Lanthipeptide Biosynthetic Enzymes.

Authors:  Lindsay M Repka; Jonathan R Chekan; Satish K Nair; Wilfred A van der Donk
Journal:  Chem Rev       Date:  2017-01-30       Impact factor: 60.622

7.  Capture of micrococcin biosynthetic intermediates reveals C-terminal processing as an obligatory step for in vivo maturation.

Authors:  Kathryn D Bewley; Philip R Bennallack; Mark A Burlingame; Richard A Robison; Joel S Griffitts; Susan M Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-17       Impact factor: 11.205

8.  Zn-dependent bifunctional proteases are responsible for leader peptide processing of class III lanthipeptides.

Authors:  Shaoming Chen; Bing Xu; Erquan Chen; Jiaqi Wang; Jingxia Lu; Stefano Donadio; Huiming Ge; Huan Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-24       Impact factor: 11.205

9.  Reconstitution and Substrate Specificity of the Thioether-Forming Radical S-Adenosylmethionine Enzyme in Freyrasin Biosynthesis.

Authors:  Timothy W Precord; Nilkamal Mahanta; Douglas A Mitchell
Journal:  ACS Chem Biol       Date:  2019-09-09       Impact factor: 5.100

10.  The Enterococcal Cytolysin Synthetase Coevolves with Substrate for Stereoselective Lanthionine Synthesis.

Authors:  Weixin Tang; Gabrielle N Thibodeaux; Wilfred A van der Donk
Journal:  ACS Chem Biol       Date:  2016-07-11       Impact factor: 5.100

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