Literature DB >> 29533845

RiPP antibiotics: biosynthesis and engineering potential.

Graham A Hudson1, Douglas A Mitchell2.   

Abstract

The threat of antibiotic resistant bacterial infections continues to underscore the need for new treatment options. Historically, small molecule metabolites from microbes have provided a rich source of antibiotic compounds, and as a result, significant effort has been invested in engineering the responsible biosynthetic pathways to generate novel analogs with attractive pharmacological properties. Unfortunately, biosynthetic stringency has limited the capacity of non-ribosomal peptide synthetases and polyketide synthases from producing substantially different analogs in large numbers. Another class of natural products, the ribosomally synthesized and post-translationally modified peptides (RiPPs), have rapidly expanded in recent years with many natively displaying potent antibiotic activity. RiPP biosynthetic pathways are modular and intrinsically tolerant to alternative substrates. Several prominent RiPPs with antibiotic activity will be covered in this review with a focus on their biosynthetic plasticity. While only a few RiPP enzymes have been thoroughly investigated mechanistically, this knowledge has already been harnessed to generate new-to-nature compounds. Through the use of synthetic biology approaches, on-going efforts in RiPP engineering hold great promise in unlocking the potential of this natural product class.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 29533845      PMCID: PMC6131089          DOI: 10.1016/j.mib.2018.02.010

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  60 in total

1.  Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria.

Authors:  Bo Li; Daniel Sher; Libusha Kelly; Yanxiang Shi; Katherine Huang; Patrick J Knerr; Ike Joewono; Doug Rusch; Sallie W Chisholm; Wilfred A van der Donk
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-17       Impact factor: 11.205

Review 2.  Mechanistic Understanding of Lanthipeptide Biosynthetic Enzymes.

Authors:  Lindsay M Repka; Jonathan R Chekan; Satish K Nair; Wilfred A van der Donk
Journal:  Chem Rev       Date:  2017-01-30       Impact factor: 60.622

3.  The spectrum of antimicrobial activity of the bacteriocin subtilosin A.

Authors:  Charles E Shelburne; Florence Y An; Vishnu Dholpe; Ayyalusamy Ramamoorthy; Dennis E Lopatin; Marilyn S Lantz
Journal:  J Antimicrob Chemother       Date:  2007-01-09       Impact factor: 5.790

4.  Production of Sactipeptides in Escherichia coli: Probing the Substrate Promiscuity of Subtilosin A Biosynthesis.

Authors:  Paul M Himes; Scott E Allen; Sungwon Hwang; Albert A Bowers
Journal:  ACS Chem Biol       Date:  2016-04-25       Impact factor: 5.100

5.  A Derivative of the Thiopeptide GE2270A Highly Selective against Propionibacterium acnes.

Authors:  Attilio Fabbretti; Cheng-Guang He; Eleonora Gaspari; Sonia Maffioli; Letizia Brandi; Roberto Spurio; Margherita Sosio; Daniela Jabes; Stefano Donadio
Journal:  Antimicrob Agents Chemother       Date:  2015-05-18       Impact factor: 5.191

6.  Reconstitution and Substrate Specificity of the Radical S-Adenosyl-methionine Thiazole C-Methyltransferase in Thiomuracin Biosynthesis.

Authors:  Nilkamal Mahanta; Zhengan Zhang; Graham A Hudson; Wilfred A van der Donk; Douglas A Mitchell
Journal:  J Am Chem Soc       Date:  2017-03-21       Impact factor: 15.419

7.  Chimeric Leader Peptides for the Generation of Non-Natural Hybrid RiPP Products.

Authors:  Brandon J Burkhart; Nidhi Kakkar; Graham A Hudson; Wilfred A van der Donk; Douglas A Mitchell
Journal:  ACS Cent Sci       Date:  2017-06-06       Impact factor: 14.553

8.  A new genome-mining tool redefines the lasso peptide biosynthetic landscape.

Authors:  Jonathan I Tietz; Christopher J Schwalen; Parth S Patel; Tucker Maxson; Patricia M Blair; Hua-Chia Tai; Uzma I Zakai; Douglas A Mitchell
Journal:  Nat Chem Biol       Date:  2017-02-28       Impact factor: 15.040

9.  Phage display and selection of lanthipeptides on the carboxy-terminus of the gene-3 minor coat protein.

Authors:  Johannes H Urban; Markus A Moosmeier; Tobias Aumüller; Marcus Thein; Tjibbe Bosma; Rick Rink; Katharina Groth; Moritz Zulley; Katja Siegers; Kathrin Tissot; Gert N Moll; Josef Prassler
Journal:  Nat Commun       Date:  2017-11-15       Impact factor: 14.919

10.  Identification of distinct nisin leader peptide regions that determine interactions with the modification enzymes NisB and NisC.

Authors:  Rustem Khusainov; Gert N Moll; Oscar P Kuipers
Journal:  FEBS Open Bio       Date:  2013-05-30       Impact factor: 2.693

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  35 in total

Review 1.  Occurrence, function, and biosynthesis of mycofactocin.

Authors:  Richard Ayikpoe; Vishnu Govindarajan; John A Latham
Journal:  Appl Microbiol Biotechnol       Date:  2019-02-18       Impact factor: 4.813

2.  The unusual structure of Ruminococcin C1 antimicrobial peptide confers clinical properties.

Authors:  Clarisse Roblin; Steve Chiumento; Olivier Bornet; Matthieu Nouailler; Christina S Müller; Katy Jeannot; Christian Basset; Sylvie Kieffer-Jaquinod; Yohann Couté; Stéphane Torelli; Laurent Le Pape; Volker Schünemann; Hamza Olleik; Bruno De La Villeon; Philippe Sockeel; Eric Di Pasquale; Cendrine Nicoletti; Nicolas Vidal; Leonora Poljak; Olga Iranzo; Thierry Giardina; Michel Fons; Estelle Devillard; Patrice Polard; Marc Maresca; Josette Perrier; Mohamed Atta; Françoise Guerlesquin; Mickael Lafond; Victor Duarte
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-27       Impact factor: 11.205

3.  Reconstitution and Substrate Specificity of the Thioether-Forming Radical S-Adenosylmethionine Enzyme in Freyrasin Biosynthesis.

Authors:  Timothy W Precord; Nilkamal Mahanta; Douglas A Mitchell
Journal:  ACS Chem Biol       Date:  2019-09-09       Impact factor: 5.100

Review 4.  How to harness biosynthetic gene clusters of lasso peptides.

Authors:  Shinya Kodani; Kohta Unno
Journal:  J Ind Microbiol Biotechnol       Date:  2020-07-23       Impact factor: 3.346

5.  Cebulantin, a Cryptic Lanthipeptide Antibiotic Uncovered Using Bioactivity-Coupled HiTES.

Authors:  Kyuho Moon; Fei Xu; Mohammad R Seyedsayamdost
Journal:  Angew Chem Int Ed Engl       Date:  2019-03-28       Impact factor: 15.336

Review 6.  The manifold roles of microbial ribosomal peptide-based natural products in physiology and ecology.

Authors:  Yanyan Li; Sylvie Rebuffat
Journal:  J Biol Chem       Date:  2019-11-29       Impact factor: 5.157

7.  Assessing the Flexibility of the Prochlorosin 2.8 Scaffold for Bioengineering Applications.

Authors:  Julian D Hegemann; Silvia C Bobeica; Mark C Walker; Ian R Bothwell; Wilfred A van der Donk
Journal:  ACS Synth Biol       Date:  2019-05-08       Impact factor: 5.110

8.  Bioinformatic Expansion and Discovery of Thiopeptide Antibiotics.

Authors:  Christopher J Schwalen; Graham A Hudson; Bryce Kille; Douglas A Mitchell
Journal:  J Am Chem Soc       Date:  2018-07-20       Impact factor: 15.419

9.  Bioinformatic Mapping of Radical S-Adenosylmethionine-Dependent Ribosomally Synthesized and Post-Translationally Modified Peptides Identifies New Cα, Cβ, and Cγ-Linked Thioether-Containing Peptides.

Authors:  Graham A Hudson; Brandon J Burkhart; Adam J DiCaprio; Christopher J Schwalen; Bryce Kille; Taras V Pogorelov; Douglas A Mitchell
Journal:  J Am Chem Soc       Date:  2019-05-13       Impact factor: 15.419

10.  Flexizyme-Enabled Benchtop Biosynthesis of Thiopeptides.

Authors:  Steven R Fleming; Tessa E Bartges; Alexander A Vinogradov; Christine L Kirkpatrick; Yuki Goto; Hiroaki Suga; Leslie M Hicks; Albert A Bowers
Journal:  J Am Chem Soc       Date:  2019-01-08       Impact factor: 15.419

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