Literature DB >> 32705462

How to harness biosynthetic gene clusters of lasso peptides.

Shinya Kodani1,2, Kohta Unno3.   

Abstract

Lasso peptides produced by bacteria have a very unique cyclic structure ("lasso" structure) and are resistant to protease. To date, a number of lasso peptides have been isolated from proteobacteria and actinobacteria. Many lasso peptides exhibit various biological activities, such as antibacterial activity, and are expected to have various applications. Based on study of genome mining, large numbers of biosynthetic gene cluster of lasso peptides are revealed to distribute over genomes of proteobacteria and actinobacteria. However, the biosynthetic gene clusters are cryptic in most cases. Therefore, the combination of genome mining and heterologous production is efficient method for the production of lasso peptides. To utilize lasso peptide as fine chemical, there have been several attempts to add new function to lasso peptide by genetic engineering. Currently, a more efficient lasso peptide production system is being developed to harness cryptic biosynthetic gene clusters of lasso peptide. In this review, the overview of lasso peptide study is discussed.

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Year:  2020        PMID: 32705462     DOI: 10.1007/s10295-020-02292-6

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  95 in total

1.  Structure of antibacterial peptide microcin J25: a 21-residue lariat protoknot.

Authors:  Marvin J Bayro; Jayanta Mukhopadhyay; G V T Swapna; Janet Y Huang; Li-Chung Ma; Elena Sineva; Philip E Dawson; Gaetano T Montelione; Richard H Ebright
Journal:  J Am Chem Soc       Date:  2003-10-15       Impact factor: 15.419

2.  Molecular mechanism of transcription inhibition by peptide antibiotic Microcin J25.

Authors:  Karen Adelman; Julia Yuzenkova; Arthur La Porta; Nikolay Zenkin; Jookyung Lee; John T Lis; Sergei Borukhov; Michelle D Wang; Konstantin Severinov
Journal:  Mol Cell       Date:  2004-06-18       Impact factor: 17.970

3.  Thermal Unthreading of the Lasso Peptides Astexin-2 and Astexin-3.

Authors:  Caitlin D Allen; Maria Y Chen; Alexander Y Trick; Dan Thanh Le; Andrew L Ferguson; A James Link
Journal:  ACS Chem Biol       Date:  2016-09-15       Impact factor: 5.100

4.  Pandonodin: A Proteobacterial Lasso Peptide with an Exceptionally Long C-Terminal Tail.

Authors:  Wai Ling Cheung-Lee; Li Cao; A James Link
Journal:  ACS Chem Biol       Date:  2019-12-05       Impact factor: 5.100

5.  Genome Mining and Heterologous Expression Reveal Two Distinct Families of Lasso Peptides Highly Conserved in Endofungal Bacteria.

Authors:  Evgeni V Bratovanov; Keishi Ishida; Beatrix Heinze; Sacha J Pidot; Timothy P Stinear; Julian D Hegemann; Mohamed A Marahiel; Christian Hertweck
Journal:  ACS Chem Biol       Date:  2019-12-18       Impact factor: 5.100

6.  Self-Assembly of Catenanes from Lasso Peptides.

Authors:  Caitlin D Allen; A James Link
Journal:  J Am Chem Soc       Date:  2016-10-21       Impact factor: 15.419

7.  Structure of the Lasso Peptide Isopeptidase Identifies a Topology for Processing Threaded Substrates.

Authors:  Jonathan R Chekan; Joseph D Koos; Chuhan Zong; Mikhail O Maksimov; A James Link; Satish K Nair
Journal:  J Am Chem Soc       Date:  2016-12-07       Impact factor: 15.419

8.  RiPPMiner: a bioinformatics resource for deciphering chemical structures of RiPPs based on prediction of cleavage and cross-links.

Authors:  Priyesh Agrawal; Shradha Khater; Money Gupta; Neetu Sain; Debasisa Mohanty
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

9.  Structural mechanism of transcription inhibition by lasso peptides microcin J25 and capistruin.

Authors:  Nathaniel R Braffman; Frank J Piscotta; Jesse Hauver; Elizabeth A Campbell; A James Link; Seth A Darst
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-09       Impact factor: 11.205

10.  antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline.

Authors:  Kai Blin; Simon Shaw; Katharina Steinke; Rasmus Villebro; Nadine Ziemert; Sang Yup Lee; Marnix H Medema; Tilmann Weber
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

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  3 in total

1.  Sphingopyxis lutea sp. nov., a novel moderately halotolerant bacterium isolated from pebbles.

Authors:  Geeta Chhetri; Inhyup Kim; Taegun Seo
Journal:  Arch Microbiol       Date:  2022-06-20       Impact factor: 2.552

2.  Phenotype-Guided Comparative Genomics Identifies the Complete Transport Pathway of the Antimicrobial Lasso Peptide Ubonodin in Burkholderia.

Authors:  Truc Do; Alina Thokkadam; Robert Leach; A James Link
Journal:  ACS Chem Biol       Date:  2022-07-08       Impact factor: 4.634

3.  Cell-Free Biosynthesis to Evaluate Lasso Peptide Formation and Enzyme-Substrate Tolerance.

Authors:  Yuanyuan Si; Ashley M Kretsch; Laura M Daigh; Mark J Burk; Douglas A Mitchell
Journal:  J Am Chem Soc       Date:  2021-04-06       Impact factor: 15.419

  3 in total

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