Literature DB >> 16522090

Backbone conformational constraints in a microcrystalline U-15N-labeled protein by 3D dipolar-shift solid-state NMR spectroscopy.

W Trent Franks1, Benjamin J Wylie, Sara A Stellfox, Chad M Rienstra.   

Abstract

Structural studies of uniformly labeled proteins by magic-angle spinning NMR spectroscopy have rapidly matured in recent years. Site-specific chemical shifts of several proteins have been assigned and structures determined from 2D or 3D data sets containing internuclear distance information. Here we demonstrate the application of a complementary technique for constraining protein backbone geometry using a site-resolved 3D dipolar-shift pulse sequence. The dipolar line shapes report on the relative orientations of 1H-15N[i] to 1H-15N[i+1] dipole vectors, constraining the torsion angles phi[i] and psi[i]. In addition, from the same 3D data set, several 1H-15N[i] to1H-15N[i+2] line shapes are extracted to constrain the torsion angles phi[i], psi[i], phi[i+1], and psi[i+1]. We report results for the majority of sites in the 56-residue beta1 immunoglobulin binding domain of protein G (GB1), using 3D experiments at 600 MHz 1H frequency. Excellent agreement between the SSNMR results and a new 1.14 A crystal structure illustrate the general potential of this technique for high-resolution structural refinement of solid proteins.

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Year:  2006        PMID: 16522090     DOI: 10.1021/ja058292x

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  20 in total

1.  Selectively dispersed isotope labeling for protein structure determination by magic angle spinning NMR.

Authors:  Matthew T Eddy; Marina Belenky; Astrid C Sivertsen; Robert G Griffin; Judith Herzfeld
Journal:  J Biomol NMR       Date:  2013-08-30       Impact factor: 2.835

2.  An experimental study of GFP-based FRET, with application to intrinsically unstructured proteins.

Authors:  Tomoo Ohashi; Stephane D Galiacy; Gina Briscoe; Harold P Erickson
Journal:  Protein Sci       Date:  2007-07       Impact factor: 6.725

3.  Protein structural studies by paramagnetic solid-state NMR spectroscopy aided by a compact cyclen-type Cu(II) binding tag.

Authors:  Ishita Sengupta; Min Gao; Rajith J Arachchige; Philippe S Nadaud; Timothy F Cunningham; Sunil Saxena; Charles D Schwieters; Christopher P Jaroniec
Journal:  J Biomol NMR       Date:  2014-11-29       Impact factor: 2.835

4.  3D MAS NMR Experiment Utilizing Through-Space 15N-15N Correlations.

Authors:  Kevin J Donovan; Robert Silvers; Sara Linse; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2017-05-03       Impact factor: 15.419

5.  Restraints on backbone conformations in solid state NMR studies of uniformly labeled proteins from quantitative amide 15N-15N and carbonyl 13C-13C dipolar recoupling data.

Authors:  Kan-Nian Hu; Wei Qiang; Guillermo A Bermejo; Charles D Schwieters; Robert Tycko
Journal:  J Magn Reson       Date:  2012-03-09       Impact factor: 2.229

6.  Zero-quantum stochastic dipolar recoupling in solid state nuclear magnetic resonance.

Authors:  Wei Qiang; Robert Tycko
Journal:  J Chem Phys       Date:  2012-09-14       Impact factor: 3.488

7.  Secondary structural analysis of proteins based on (13)C chemical shift assignments in unresolved solid-state NMR spectra enhanced by fragmented structure database.

Authors:  Keisuke Ikeda; Ayako Egawa; Toshimichi Fujiwara
Journal:  J Biomol NMR       Date:  2012-12-29       Impact factor: 2.835

8.  Combination of ¹⁵N reverse labeling and afterglow spectroscopy for assigning membrane protein spectra by magic-angle-spinning solid-state NMR: application to the multidrug resistance protein EmrE.

Authors:  James R Banigan; Anindita Gayen; Nathaniel J Traaseth
Journal:  J Biomol NMR       Date:  2013-03-29       Impact factor: 2.835

9.  Dipole tensor-based atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR.

Authors:  W Trent Franks; Benjamin J Wylie; Heather L Frericks Schmidt; Andrew J Nieuwkoop; Rebecca-Maria Mayrhofer; Gautam J Shah; Daniel T Graesser; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-14       Impact factor: 11.205

10.  Spinning-rate encoded chemical shift correlations from rotational resonance solid-state NMR experiments.

Authors:  Jun Li; Patrick C A van der Wel
Journal:  J Magn Reson       Date:  2013-02-14       Impact factor: 2.229

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