Literature DB >> 23294422

Lanthanide tags for site-specific ligation to an unnatural amino acid and generation of pseudocontact shifts in proteins.

Choy Theng Loh1, Kiyoshi Ozawa, Kellie L Tuck, Nicholas Barlow, Thomas Huber, Gottfried Otting, Bim Graham.   

Abstract

Pseudocontact shifts (PCS) from paramagnetic lanthanide ions present powerful long-range structural restraints for structural biology by NMR spectroscopy, but site-specific tagging of proteins with lanthanides remains a challenge, as most of the available lanthanide tags require proteins with single cysteine residues. We show that cyclen-based paramagnetic lanthanide tags can be attached to proteins in a site-specific manner by Cu(I)-catalyzed azide-alkyne cycloaddition to a genetically encoded p-azido-l-phenylalanine residue with a tether that proved sufficiently short and rigid for the observation of PCSs in several proteins. Despite the sterically demanding conditions associated with bulky tags and reactions close to the protein surface, ligation yields consistently above 50% and approaching 100% were obtained with the help of the Cu(I)-stabilizing ligand BTTAA. The yields were high independent of the presence of cysteine residues, thereby avoiding the need for cysteine mutations associated with conventional lanthanide-tagging strategies.

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Year:  2013        PMID: 23294422     DOI: 10.1021/bc300631z

Source DB:  PubMed          Journal:  Bioconjug Chem        ISSN: 1043-1802            Impact factor:   4.774


  20 in total

1.  A new carbamidemethyl-linked lanthanoid chelating tag for PCS NMR spectroscopy of proteins in living HeLa cells.

Authors:  Yuya Hikone; Go Hirai; Masaki Mishima; Kohsuke Inomata; Teppei Ikeya; Souichiro Arai; Masahiro Shirakawa; Mikiko Sodeoka; Yutaka Ito
Journal:  J Biomol NMR       Date:  2016-09-08       Impact factor: 2.835

2.  Information content of long-range NMR data for the characterization of conformational heterogeneity.

Authors:  Witold Andrałojć; Konstantin Berlin; David Fushman; Claudio Luchinat; Giacomo Parigi; Enrico Ravera; Luca Sgheri
Journal:  J Biomol NMR       Date:  2015-06-05       Impact factor: 2.835

3.  Protein structural studies by paramagnetic solid-state NMR spectroscopy aided by a compact cyclen-type Cu(II) binding tag.

Authors:  Ishita Sengupta; Min Gao; Rajith J Arachchige; Philippe S Nadaud; Timothy F Cunningham; Sunil Saxena; Charles D Schwieters; Christopher P Jaroniec
Journal:  J Biomol NMR       Date:  2014-11-29       Impact factor: 2.835

4.  FANTEN: a new web-based interface for the analysis of magnetic anisotropy-induced NMR data.

Authors:  Mauro Rinaldelli; Azzurra Carlon; Enrico Ravera; Giacomo Parigi; Claudio Luchinat
Journal:  J Biomol NMR       Date:  2014-11-22       Impact factor: 2.835

5.  Conformationally locked lanthanide chelating tags for convenient pseudocontact shift protein nuclear magnetic resonance spectroscopy.

Authors:  Daniel Joss; Roché M Walliser; Kaspar Zimmermann; Daniel Häussinger
Journal:  J Biomol NMR       Date:  2018-08-16       Impact factor: 2.835

6.  How reliable are pseudocontact shifts induced in proteins and ligands by mobile paramagnetic metal tags? A modelling study.

Authors:  Dmitry Shishmarev; Gottfried Otting
Journal:  J Biomol NMR       Date:  2013-05-08       Impact factor: 2.835

7.  Synthesis and Explosion Hazards of 4-Azido-l-phenylalanine.

Authors:  Mark B Richardson; Derek B Brown; Carlos A Vasquez; Joseph W Ziller; Kevin M Johnston; Gregory A Weiss
Journal:  J Org Chem       Date:  2018-04-02       Impact factor: 4.354

8.  Lanthanoid tagging via an unnatural amino acid for protein structure characterization.

Authors:  Wen-Xue Jiang; Xin-Hua Gu; Xu Dong; Chun Tang
Journal:  J Biomol NMR       Date:  2017-04-01       Impact factor: 2.835

9.  An encodable lanthanide binding tag with reduced size and flexibility for measuring residual dipolar couplings and pseudocontact shifts in large proteins.

Authors:  Adam W Barb; Ganesh P Subedi
Journal:  J Biomol NMR       Date:  2016-01-04       Impact factor: 2.835

10.  Pulse EPR-enabled interpretation of scarce pseudocontact shifts induced by lanthanide binding tags.

Authors:  Elwy H Abdelkader; Xuejun Yao; Akiva Feintuch; Luke A Adams; Luigi Aurelio; Bim Graham; Daniella Goldfarb; Gottfried Otting
Journal:  J Biomol NMR       Date:  2015-11-23       Impact factor: 2.835

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