Literature DB >> 35084831

Paramagnetic Chemical Probes for Studying Biological Macromolecules.

Qing Miao1,2, Christoph Nitsche3, Henry Orton3,4, Mark Overhand1, Gottfried Otting3,4, Marcellus Ubbink1.   

Abstract

Paramagnetic chemical probes have been used in electron paramagnetic resonance (EPR) and nuclear magnetic resonance (NMR) spectroscopy for more than four decades. Recent years witnessed a great increase in the variety of probes for the study of biological macromolecules (proteins, nucleic acids, and oligosaccharides). This Review aims to provide a comprehensive overview of the existing paramagnetic chemical probes, including chemical synthetic approaches, functional properties, and selected applications. Recent developments have seen, in particular, a rapid expansion of the range of lanthanoid probes with anisotropic magnetic susceptibilities for the generation of structural restraints based on residual dipolar couplings and pseudocontact shifts in solution and solid state NMR spectroscopy, mostly for protein studies. Also many new isotropic paramagnetic probes, suitable for NMR measurements of paramagnetic relaxation enhancements, as well as EPR spectroscopic studies (in particular double resonance techniques) have been developed and employed to investigate biological macromolecules. Notwithstanding the large number of reported probes, only few have found broad application and further development of probes for dedicated applications is foreseen.

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Year:  2022        PMID: 35084831      PMCID: PMC9136935          DOI: 10.1021/acs.chemrev.1c00708

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   72.087


  514 in total

1.  An NMR study of anion binding to yeast phosphoglycerate kinase.

Authors:  W J Fairbrother; H C Graham; R J Williams
Journal:  Eur J Biochem       Date:  1990-05-31

2.  Combining NMR and EPR to Determine Structures of Large RNAs and Protein-RNA Complexes in Solution.

Authors:  Olivier Duss; Maxim Yulikov; Frédéric H T Allain; Gunnar Jeschke
Journal:  Methods Enzymol       Date:  2015-03-26       Impact factor: 1.600

3.  In-Cell Protein Structures from 2D NMR Experiments.

Authors:  Thomas Müntener; Daniel Häussinger; Philipp Selenko; Francois-Xavier Theillet
Journal:  J Phys Chem Lett       Date:  2016-07-12       Impact factor: 6.475

4.  Fluorine Pseudocontact Shifts Used for Characterizing the Protein-Ligand Interaction Mode in the Limit of NMR Intermediate Exchange.

Authors:  Jia Gao; E Liang; Rongsheng Ma; Fudong Li; Yixiang Liu; Jiuyang Liu; Ling Jiang; Conggang Li; Haiming Dai; Jihui Wu; Xuncheng Su; Wei He; Ke Ruan
Journal:  Angew Chem Int Ed Engl       Date:  2017-09-19       Impact factor: 15.336

5.  EPR spectroscopic analysis of U7 hammerhead ribozyme dynamics during metal ion induced folding.

Authors:  Thomas E Edwards; Snorri Th Sigurdsson
Journal:  Biochemistry       Date:  2005-09-27       Impact factor: 3.162

6.  EPR Distance Measurements in Native Proteins with Genetically Encoded Spin Labels.

Authors:  Moritz J Schmidt; Artem Fedoseev; Dennis Bücker; Julia Borbas; Christine Peter; Malte Drescher; Daniel Summerer
Journal:  ACS Chem Biol       Date:  2015-10-06       Impact factor: 5.100

7.  Tuning the affinity for lanthanides of calcium binding proteins.

Authors:  Ivano Bertini; Ioannis Gelis; Nikolaos Katsaros; Claudio Luchinat; Alessandro Provenzani
Journal:  Biochemistry       Date:  2003-07-08       Impact factor: 3.162

8.  A Focal Adhesion Kinase-Derived Peptide Binds the Src SH3 Domain in Two Orientations, As Demonstrated Using Paramagnetic Nuclear Magnetic Resonance.

Authors:  Bharat Somireddy Venkata; Peter H J Keizers; Jan W Drijfhout; Marcellus Ubbink
Journal:  Biochemistry       Date:  2015-12-21       Impact factor: 3.162

9.  Installation of a Rigid EDTA-Like Motif into a Protein α-Helix for Paramagnetic NMR Spectroscopy with Cobalt(II) Ions.

Authors:  James D Swarbrick; Phuc Ung; Matthew L Dennis; Michael D Lee; Sandeep Chhabra; Bim Graham
Journal:  Chemistry       Date:  2015-12-17       Impact factor: 5.236

Review 10.  Protein conjugation with genetically encoded unnatural amino acids.

Authors:  Chan Hyuk Kim; Jun Y Axup; Peter G Schultz
Journal:  Curr Opin Chem Biol       Date:  2013-05-09       Impact factor: 8.822

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  2 in total

1.  A dysprosium single molecule magnet outperforming current pseudocontact shift agents.

Authors:  Francielli S Santana; Mauro Perfetti; Matteo Briganti; Francesca Sacco; Giordano Poneti; Enrico Ravera; Jaísa F Soares; Roberta Sessoli
Journal:  Chem Sci       Date:  2022-04-26       Impact factor: 9.969

2.  Nucleic acid-protein interfaces studied by MAS solid-state NMR spectroscopy.

Authors:  Philipp Innig Aguion; Alexander Marchanka; Teresa Carlomagno
Journal:  J Struct Biol X       Date:  2022-08-18
  2 in total

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