Literature DB >> 25309990

Advances in the directed evolution of proteins.

Michael D Lane1, Burckhard Seelig2.   

Abstract

Natural evolution has produced a great diversity of proteins that can be harnessed for numerous applications in biotechnology and pharmaceutical science. Commonly, specific applications require proteins to be tailored by protein engineering. Directed evolution is a type of protein engineering that yields proteins with the desired properties under well-defined conditions and in a practical time frame. While directed evolution has been employed for decades, recent creative developments enable the generation of proteins with previously inaccessible properties. Novel selection strategies, faster techniques, the inclusion of unnatural amino acids or modifications, and the symbiosis of rational design approaches and directed evolution continue to advance protein engineering.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25309990      PMCID: PMC4253873          DOI: 10.1016/j.cbpa.2014.09.013

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  74 in total

1.  Directed evolution of an extremely fast phosphotriesterase by in vitro compartmentalization.

Authors:  Andrew D Griffiths; Dan S Tawfik
Journal:  EMBO J       Date:  2003-01-02       Impact factor: 11.598

2.  Directed evolution of the peroxidase activity of a de novo-designed protein.

Authors:  Shona C Patel; Michael H Hecht
Journal:  Protein Eng Des Sel       Date:  2012-06-03       Impact factor: 1.650

3.  Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis.

Authors:  Sagar D Khare; Yakov Kipnis; Per Greisen; Ryo Takeuchi; Yacov Ashani; Moshe Goldsmith; Yifan Song; Jasmine L Gallaher; Israel Silman; Haim Leader; Joel L Sussman; Barry L Stoddard; Dan S Tawfik; David Baker
Journal:  Nat Chem Biol       Date:  2012-02-05       Impact factor: 15.040

Review 4.  Expanding P450 catalytic reaction space through evolution and engineering.

Authors:  John A McIntosh; Christopher C Farwell; Frances H Arnold
Journal:  Curr Opin Chem Biol       Date:  2014-03-20       Impact factor: 8.822

Review 5.  Strategies for the discovery and engineering of enzymes for biocatalysis.

Authors:  Timo Davids; Marlen Schmidt; Dominique Böttcher; Uwe T Bornscheuer
Journal:  Curr Opin Chem Biol       Date:  2013-03-21       Impact factor: 8.822

6.  Ultra-high-throughput screening method for the directed evolution of glucose oxidase.

Authors:  Raluca Ostafe; Radivoje Prodanovic; Jovana Nazor; Rainer Fischer
Journal:  Chem Biol       Date:  2014-03-06

7.  Highly diverse protein library based on the ubiquitous (β/α)₈ enzyme fold yields well-structured proteins through in vitro folding selection.

Authors:  Misha V Golynskiy; John C Haugner; Burckhard Seelig
Journal:  Chembiochem       Date:  2013-08-16       Impact factor: 3.164

8.  Directed evolution of angiotensin II-inhibiting peptides using a microbead display.

Authors:  Rui Gan; Seiji Furuzawa; Takaaki Kojima; Kei Kanie; Ryuji Kato; Mina Okochi; Hiroyuki Honda; Hideo Nakano
Journal:  J Biosci Bioeng       Date:  2009-11-14       Impact factor: 2.894

Review 9.  Engineering next generation proteases.

Authors:  Mark Pogson; George Georgiou; Brent L Iverson
Journal:  Curr Opin Biotechnol       Date:  2009-08-24       Impact factor: 9.740

10.  In vitro Fab display: a cell-free system for IgG discovery.

Authors:  Ryan L Stafford; Marissa L Matsumoto; Gang Yin; Qi Cai; Juan Jose Fung; Heather Stephenson; Avinash Gill; Monica You; Shwu-Hwa Lin; Willie D Wang; Mary Rose Masikat; Xiaofan Li; Kalyani Penta; Alex R Steiner; Ramesh Baliga; Christopher J Murray; Christopher D Thanos; Trevor J Hallam; Aaron K Sato
Journal:  Protein Eng Des Sel       Date:  2014-02-28       Impact factor: 1.650

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  24 in total

1.  Sustainable proliferation of liposomes compatible with inner RNA replication.

Authors:  Gakushi Tsuji; Satoshi Fujii; Takeshi Sunami; Tetsuya Yomo
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-28       Impact factor: 11.205

2.  Consensus sequence design as a general strategy to create hyperstable, biologically active proteins.

Authors:  Matt Sternke; Katherine W Tripp; Doug Barrick
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-20       Impact factor: 11.205

Review 3.  Tailoring Proteins to Re-Evolve Nature: A Short Review.

Authors:  Angelica Jimenez-Rosales; Miriam V Flores-Merino
Journal:  Mol Biotechnol       Date:  2018-12       Impact factor: 2.695

4.  Extensive libraries of gene truncation variants generated by in vitro transposition.

Authors:  Aleardo Morelli; Yari Cabezas; Lauren J Mills; Burckhard Seelig
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

Review 5.  Peptide aptamers: development and applications.

Authors:  Sergey Reverdatto; David S Burz; Alexander Shekhtman
Journal:  Curr Top Med Chem       Date:  2015       Impact factor: 3.295

6.  Directed Evolution of Glycopeptides Using mRNA Display.

Authors:  Satoru Horiya; Jennifer K Bailey; Isaac J Krauss
Journal:  Methods Enzymol       Date:  2017-08-18       Impact factor: 1.600

Review 7.  Emerging Strategies for Developing Next-Generation Protein Therapeutics for Cancer Treatment.

Authors:  James R Kintzing; Maria V Filsinger Interrante; Jennifer R Cochran
Journal:  Trends Pharmacol Sci       Date:  2016-11-09       Impact factor: 14.819

Review 8.  Conceptual and methodological advances in cell-free directed evolution.

Authors:  Igor Dodevski; George C Markou; Casim A Sarkar
Journal:  Curr Opin Struct Biol       Date:  2015-06-18       Impact factor: 6.809

Review 9.  Using experimental evolution to probe molecular mechanisms of protein function.

Authors:  Marlies Fischer; Mandeep Kang; Nicholas Pj Brindle
Journal:  Protein Sci       Date:  2015-11-14       Impact factor: 6.725

10.  Extending enzyme molecular recognition with an expanded amino acid alphabet.

Authors:  Claire L Windle; Katie J Simmons; James R Ault; Chi H Trinh; Adam Nelson; Arwen R Pearson; Alan Berry
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-14       Impact factor: 11.205

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