Literature DB >> 19709875

Engineering next generation proteases.

Mark Pogson1, George Georgiou, Brent L Iverson.   

Abstract

The engineering of novel and precise sequence specificity into proteases will provide an important route to the development of exciting new tools for analytical, biotechnological, and therapeutic applications. Significant progress has been made in reprogramming protease specificity, largely because of the development of high-throughput assay technologies allowing the isolation of protease variants from large libraries. For example, using directed evolution as well as other approaches, proteases have been reprogrammed to cleave substrates containing a variety of amino acids in the P1 and P1' positions including a post-translationally modified tyrosine, a specificity not yet identified in any naturally occurring protease. Together, these recent advances represent substantial progress that could soon enable the widespread application of engineered proteases.

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Year:  2009        PMID: 19709875      PMCID: PMC2763932          DOI: 10.1016/j.copbio.2009.07.003

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  48 in total

1.  A combinatorial approach to hybrid enzymes independent of DNA homology.

Authors:  M Ostermeier; J H Shim; S J Benkovic
Journal:  Nat Biotechnol       Date:  1999-12       Impact factor: 54.908

2.  Biopharmaceutical benchmarks 2006.

Authors:  Gary Walsh
Journal:  Nat Biotechnol       Date:  2006-07       Impact factor: 54.908

3.  Diversification and specialization of HIV protease function during in vitro evolution.

Authors:  Taryn L O'Loughlin; Dina N Greene; Ichiro Matsumura
Journal:  Mol Biol Evol       Date:  2006-01-19       Impact factor: 16.240

Review 4.  Enzyme promiscuity: evolutionary and mechanistic aspects.

Authors:  Olga Khersonsky; Cintia Roodveldt; Dan S Tawfik
Journal:  Curr Opin Chem Biol       Date:  2006-08-30       Impact factor: 8.822

Review 5.  Directed evolution: an approach to engineer enzymes.

Authors:  Jasjeet Kaur; Rohit Sharma
Journal:  Crit Rev Biotechnol       Date:  2006 Jul-Sep       Impact factor: 8.429

6.  Construction and flow cytometric screening of targeted enzyme libraries.

Authors:  Navin Varadarajan; Jason R Cantor; George Georgiou; Brent L Iverson
Journal:  Nat Protoc       Date:  2009-05-21       Impact factor: 13.491

Review 7.  Complement activation and inhibition: a delicate balance.

Authors:  A P Sjöberg; L A Trouw; A M Blom
Journal:  Trends Immunol       Date:  2009-01-12       Impact factor: 16.687

8.  Addressing the numbers problem in directed evolution.

Authors:  Manfred T Reetz; Daniel Kahakeaw; Renate Lohmer
Journal:  Chembiochem       Date:  2008-07-21       Impact factor: 3.164

9.  A PhoP-regulated outer membrane protease of Salmonella enterica serovar typhimurium promotes resistance to alpha-helical antimicrobial peptides.

Authors:  T Guina; E C Yi; H Wang; M Hackett; S I Miller
Journal:  J Bacteriol       Date:  2000-07       Impact factor: 3.490

Review 10.  Protease proteomics: revealing protease in vivo functions using systems biology approaches.

Authors:  Alain Doucet; Christopher M Overall
Journal:  Mol Aspects Med       Date:  2008-05-01
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  9 in total

1.  Basis for substrate recognition and distinction by matrix metalloproteinases.

Authors:  Boris I Ratnikov; Piotr Cieplak; Kosi Gramatikoff; James Pierce; Alexey Eroshkin; Yoshinobu Igarashi; Marat Kazanov; Qing Sun; Adam Godzik; Andrei Osterman; Boguslaw Stec; Alex Strongin; Jeffrey W Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-22       Impact factor: 11.205

Review 2.  Protein Design: From the Aspect of Water Solubility and Stability.

Authors:  Rui Qing; Shilei Hao; Eva Smorodina; David Jin; Arthur Zalevsky; Shuguang Zhang
Journal:  Chem Rev       Date:  2022-08-03       Impact factor: 72.087

3.  Engineering of TEV protease variants by yeast ER sequestration screening (YESS) of combinatorial libraries.

Authors:  Li Yi; Mark C Gebhard; Qing Li; Joseph M Taft; George Georgiou; Brent L Iverson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-15       Impact factor: 11.205

Review 4.  Advances in the directed evolution of proteins.

Authors:  Michael D Lane; Burckhard Seelig
Journal:  Curr Opin Chem Biol       Date:  2014-10-11       Impact factor: 8.822

5.  A highly scalable peptide-based assay system for proteomics.

Authors:  Igor A Kozlov; Elliot R Thomsen; Sarah E Munchel; Patricia Villegas; Petr Capek; Austin J Gower; Stephanie J K Pond; Eugene Chudin; Mark S Chee
Journal:  PLoS One       Date:  2012-06-12       Impact factor: 3.240

6.  Substrate Sorting by a Supercharged Nanoreactor.

Authors:  Yusuke Azuma; Daniel L V Bader; Donald Hilvert
Journal:  J Am Chem Soc       Date:  2018-01-02       Impact factor: 15.419

7.  Applications of the class II lanthipeptide protease LicP for sequence-specific, traceless peptide bond cleavage.

Authors:  Weixin Tang; Shi-Hui Dong; Lindsay M Repka; Chang He; Satish K Nair; Wilfred A van der Donk
Journal:  Chem Sci       Date:  2015-09-02       Impact factor: 9.825

8.  Enhancing the promiscuity of a member of the Caspase protease family by rational design.

Authors:  Christoph Öhlknecht; Drazen Petrov; Petra Engele; Christina Kröß; Bernhard Sprenger; Andreas Fischer; Nico Lingg; Rainer Schneider; Chris Oostenbrink
Journal:  Proteins       Date:  2020-06-11

9.  Research applications of proteolytic enzymes in molecular biology.

Authors:  János András Mótyán; Ferenc Tóth; József Tőzsér
Journal:  Biomolecules       Date:  2013-11-08
  9 in total

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