Literature DB >> 26093059

Conceptual and methodological advances in cell-free directed evolution.

Igor Dodevski1, George C Markou2, Casim A Sarkar3.   

Abstract

Although cell-free directed evolution methods have been used to engineer proteins for nearly two decades, selections on more complex phenotypes have largely remained in the domain of cell-based engineering approaches. Here, we review recent conceptual advances that now enable in vitro display of multimeric proteins, integral membrane proteins, and proteins with an expanded amino acid repertoire. Additionally, we discuss methodological improvements that have enhanced the accessibility, efficiency, and robustness of cell-free approaches. Coupling these advances with the in vitro advantages of creating exceptionally large libraries and precisely controlling all experimental conditions, cell-free directed evolution is poised to contribute significantly to our understanding and engineering of more complex protein phenotypes.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26093059      PMCID: PMC4641812          DOI: 10.1016/j.sbi.2015.04.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  57 in total

1.  Multi-subunit proteins on the surface of filamentous phage: methodologies for displaying antibody (Fab) heavy and light chains.

Authors:  H R Hoogenboom; A D Griffiths; K S Johnson; D J Chiswell; P Hudson; G Winter
Journal:  Nucleic Acids Res       Date:  1991-08-11       Impact factor: 16.971

2.  Construction of a rationally designed antibody platform for sequencing-assisted selection.

Authors:  H Benjamin Larman; George Jing Xu; Natalya N Pavlova; Stephen J Elledge
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-11       Impact factor: 11.205

Review 3.  Cell-free synthetic biology: thinking outside the cell.

Authors:  C Eric Hodgman; Michael C Jewett
Journal:  Metab Eng       Date:  2011-09-18       Impact factor: 9.783

4.  Ribosome display enhanced by next generation sequencing: a tool to identify antibody-specific peptide ligands.

Authors:  Ewa Heyduk; Tomasz Heyduk
Journal:  Anal Biochem       Date:  2014-07-21       Impact factor: 3.365

5.  SNAP dendrimers: multivalent protein display on dendrimer-like DNA for directed evolution.

Authors:  Miriam Kaltenbach; Viktor Stein; Florian Hollfelder
Journal:  Chembiochem       Date:  2011-07-21       Impact factor: 3.164

6.  Selection and evolution of enzymes from a partially randomized non-catalytic scaffold.

Authors:  Burckhard Seelig; Jack W Szostak
Journal:  Nature       Date:  2007-08-16       Impact factor: 49.962

7.  Structure and dynamics of a primordial catalytic fold generated by in vitro evolution.

Authors:  Fa-An Chao; Aleardo Morelli; John C Haugner; Lewis Churchfield; Leonardo N Hagmann; Lei Shi; Larry R Masterson; Ritimukta Sarangi; Gianluigi Veglia; Burckhard Seelig
Journal:  Nat Chem Biol       Date:  2012-12-09       Impact factor: 15.040

8.  In vitro affinity screening of protein and peptide binders by megavalent bead surface display.

Authors:  Letizia Diamante; Pietro Gatti-Lafranconi; Yolanda Schaerli; Florian Hollfelder
Journal:  Protein Eng Des Sel       Date:  2013-08-26       Impact factor: 1.650

9.  In vitro Fab display: a cell-free system for IgG discovery.

Authors:  Ryan L Stafford; Marissa L Matsumoto; Gang Yin; Qi Cai; Juan Jose Fung; Heather Stephenson; Avinash Gill; Monica You; Shwu-Hwa Lin; Willie D Wang; Mary Rose Masikat; Xiaofan Li; Kalyani Penta; Alex R Steiner; Ramesh Baliga; Christopher J Murray; Christopher D Thanos; Trevor J Hallam; Aaron K Sato
Journal:  Protein Eng Des Sel       Date:  2014-02-28       Impact factor: 1.650

10.  Directed evolution of multivalent glycopeptides tightly recognized by HIV antibody 2G12.

Authors:  Satoru Horiya; Jennifer K Bailey; J Sebastian Temme; Yollete V Guillen Schlippe; Isaac J Krauss
Journal:  J Am Chem Soc       Date:  2014-04-01       Impact factor: 15.419

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  6 in total

1.  Natural selection in compartmentalized environment with reshuffling.

Authors:  A S Zadorin; Y Rondelez
Journal:  J Math Biol       Date:  2019-07-13       Impact factor: 2.259

2.  A Shorter Route to Antibody Binders via Quantitative in vitro Bead-Display Screening and Consensus Analysis.

Authors:  Sylwia A Mankowska; Pietro Gatti-Lafranconi; Matthieu Chodorge; Sudharsan Sridharan; Ralph R Minter; Florian Hollfelder
Journal:  Sci Rep       Date:  2016-11-07       Impact factor: 4.379

3.  Flexible Proteins at the Origin of Life.

Authors:  Andrew Pohorille; Michael A Wilson; Gareth Shannon
Journal:  Life (Basel)       Date:  2017-06-05

Review 4.  Synthetic Biology Goes Cell-Free.

Authors:  Aidan Tinafar; Katariina Jaenes; Keith Pardee
Journal:  BMC Biol       Date:  2019-08-08       Impact factor: 7.431

Review 5.  High-Throughput Screening in Protein Engineering: Recent Advances and Future Perspectives.

Authors:  Magdalena Wójcik; Aline Telzerow; Wim J Quax; Ykelien L Boersma
Journal:  Int J Mol Sci       Date:  2015-10-20       Impact factor: 5.923

Review 6.  Bacterial cell-free expression technology to in vitro systems engineering and optimization.

Authors:  Filippo Caschera
Journal:  Synth Syst Biotechnol       Date:  2017-08-07
  6 in total

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