Literature DB >> 30264233

Tailoring Proteins to Re-Evolve Nature: A Short Review.

Angelica Jimenez-Rosales1, Miriam V Flores-Merino2.   

Abstract

Proteins are key biomolecules for most biological processes, their function is related to their conformation that is also dictated by their sequence of amino acids. Through evolution, nature has produced an immense variety of enzymatic tools of high efficiency and selectivity, and thanks to the understanding of the molecular basis of life and the technological advances, scientists have learned to introduce mutations and select mutant enzymes, to optimize and control their molecular fitness characteristics mainly for industrial, medical and environmental applications. The relationship between protein structure and enzymatic functionality is essential, and there are various experimental and instrumental techniques for unravelling the molecular changes, activities and specificities. Protein engineering applies computational tools, in hand with experimental tools for mutations, like directed evolution and rational design, along with screening methods to obtain protein variations with the desired properties under a short time frame. With innovations in technology, it is possible to fine tune properties in proteins and reach new frontiers in their applications. The present review will briefly discuss these points and methods, with a glimpse on their strengths and pitfalls, while giving an overview of the versatility of synthetic proteins and their huge potential for biotechnological and biomedical fields.

Keywords:  Biocatalysis; Directed evolution; Enzyme modification; Protein engineering; Random mutagenesis; Site-directed mutagenesis

Mesh:

Substances:

Year:  2018        PMID: 30264233     DOI: 10.1007/s12033-018-0122-3

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  142 in total

Review 1.  Better library design: data-driven protein engineering.

Authors:  Javier F Chaparro-Riggers; Karen M Polizzi; Andreas S Bommarius
Journal:  Biotechnol J       Date:  2007-02       Impact factor: 4.677

2.  The MBT repeats of L3MBTL1 link SET8-mediated p53 methylation at lysine 382 to target gene repression.

Authors:  Lisandra E West; Siddhartha Roy; Karin Lachmi-Weiner; Ryo Hayashi; Xiaobing Shi; Ettore Appella; Tatiana G Kutateladze; Or Gozani
Journal:  J Biol Chem       Date:  2010-09-24       Impact factor: 5.157

3.  Protein analysis by dynamic light scattering: methods and techniques for students.

Authors:  Bernard Lorber; Frédéric Fischer; Marc Bailly; Hervé Roy; Daniel Kern
Journal:  Biochem Mol Biol Educ       Date:  2012-10-10       Impact factor: 1.160

4.  Iterative saturation mutagenesis: a powerful approach to engineer proteins by systematically simulating Darwinian evolution.

Authors:  Carlos G Acevedo-Rocha; Sabrina Hoebenreich; Manfred T Reetz
Journal:  Methods Mol Biol       Date:  2014

5.  Directed evolution of phosphotriesterase from Pseudomonas diminuta for heterologous expression in Escherichia coli results in stabilization of the metal-free state.

Authors:  C Roodveldt; D S Tawfik
Journal:  Protein Eng Des Sel       Date:  2005-01       Impact factor: 1.650

6.  Co-operative intra-protein structural response due to protein-protein complexation revealed through thermodynamic quantification: study of MDM2-p53 binding.

Authors:  Sudipta Samanta; Sanchita Mukherjee
Journal:  J Comput Aided Mol Des       Date:  2017-09-04       Impact factor: 3.686

7.  Bio-orthogonal affinity purification of direct kinase substrates.

Authors:  Jasmina J Allen; Scott E Lazerwith; Kevan M Shokat
Journal:  J Am Chem Soc       Date:  2005-04-20       Impact factor: 15.419

Review 8.  Current Technological Improvements in Enzymes toward Their Biotechnological Applications.

Authors:  Mehak Baweja; Lata Nain; Yutaka Kawarabayasi; Pratyoosh Shukla
Journal:  Front Microbiol       Date:  2016-06-16       Impact factor: 5.640

9.  Machine learning to design integral membrane channelrhodopsins for efficient eukaryotic expression and plasma membrane localization.

Authors:  Claire N Bedbrook; Kevin K Yang; Austin J Rice; Viviana Gradinaru; Frances H Arnold
Journal:  PLoS Comput Biol       Date:  2017-10-23       Impact factor: 4.475

Review 10.  Enzyme Engineering for In Situ Immobilization.

Authors:  Fabian B H Rehm; Shuxiong Chen; Bernd H A Rehm
Journal:  Molecules       Date:  2016-10-14       Impact factor: 4.411

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  2 in total

Review 1.  Harnessing glycoenzyme engineering for synthesis of bioactive oligosaccharides.

Authors:  Mounir Benkoulouche; Régis Fauré; Magali Remaud-Siméon; Claire Moulis; Isabelle André
Journal:  Interface Focus       Date:  2019-02-15       Impact factor: 3.906

Review 2.  Reviewing Challenges of Predicting Protein Melting Temperature Change Upon Mutation Through the Full Analysis of a Highly Detailed Dataset with High-Resolution Structures.

Authors:  Benjamin B V Louis; Luciano A Abriata
Journal:  Mol Biotechnol       Date:  2021-06-08       Impact factor: 2.695

  2 in total

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