| Literature DB >> 21202646 |
M Sukeri M Yusof, Siti Hajar Muharam, M B Kassim, Bohari M Yamin.
Abstract
In the title compound, C(12)H(15)N(3)O(3)S, there is an intra-molecular N-H⋯O hydrogen bond. The crystal structure is stabilized by inter-molecular N-H⋯O, N-H⋯S and C-H⋯S hydrogen bonds, forming a two-dimensional network parallel to the ac plane.Entities:
Year: 2008 PMID: 21202646 PMCID: PMC2961577 DOI: 10.1107/S1600536808014530
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H15N3O3S | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2n | Cell parameters from 925 reflections |
| θ = 2.0–27.5º | |
| µ = 0.24 mm−1 | |
| Block, colourless | |
| 0.48 × 0.18 × 0.12 mm |
| Bruker SMART APEX CCD area-detector diffractometer | 3020 independent reflections |
| Radiation source: fine-focus sealed tube | 2321 reflections with |
| Monochromator: graphite | |
| Detector resolution: 83.66 pixels mm-1 | θmax = 27.5º |
| θmin = 2.0º | |
| ω scans | |
| Absorption correction: multi-scan(SADABS; Bruker, 2000) | |
| 8152 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| | |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.28 e Å−3 | |
| 3020 reflections | Δρmin = −0.14 e Å−3 |
| 172 parameters | Extinction correction: none |
| 1 restraint | Absolute structure: Flack (1983), 1296 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.07 (9) |
| Secondary atom site location: difference Fourier map |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.97040 (3) | 0.39600 (5) | 0.62603 (13) | 0.04412 (17) | |
| O3 | 0.72971 (13) | 0.0240 (2) | 0.9230 (4) | 0.0936 (8) | |
| O2 | 0.73374 (10) | 0.13216 (17) | 0.6346 (5) | 0.0791 (6) | |
| O1 | 0.84682 (10) | 0.73243 (15) | 0.7556 (4) | 0.0694 (6) | |
| N2 | 0.86872 (9) | 0.49974 (16) | 0.8218 (3) | 0.0422 (5) | |
| H2A | 0.8456 | 0.5640 | 0.8480 | 0.051* | |
| N1 | 0.92866 (9) | 0.62483 (14) | 0.5965 (3) | 0.0394 (5) | |
| H1A | 0.9603 | 0.6304 | 0.5055 | 0.047* | |
| C11 | 0.79218 (11) | 0.2008 (2) | 0.9299 (4) | 0.0414 (5) | |
| C10 | 0.81336 (11) | 0.1747 (2) | 1.1350 (5) | 0.0490 (6) | |
| H10A | 0.7999 | 0.1035 | 1.2052 | 0.059* | |
| C9 | 0.85486 (13) | 0.2563 (2) | 1.2331 (5) | 0.0521 (6) | |
| H9A | 0.8704 | 0.2395 | 1.3708 | 0.062* | |
| C8 | 0.87392 (11) | 0.36328 (19) | 1.1304 (5) | 0.0463 (5) | |
| H8A | 0.9018 | 0.4187 | 1.1985 | 0.056* | |
| C7 | 0.85101 (11) | 0.38661 (19) | 0.9253 (4) | 0.0387 (5) | |
| C12 | 0.80979 (11) | 0.3062 (2) | 0.8226 (4) | 0.0413 (5) | |
| H12A | 0.7942 | 0.3224 | 0.6848 | 0.050* | |
| N3 | 0.74809 (11) | 0.11334 (19) | 0.8218 (5) | 0.0557 (6) | |
| C6 | 0.91904 (11) | 0.50999 (19) | 0.6876 (4) | 0.0375 (5) | |
| C5 | 0.89385 (11) | 0.73105 (18) | 0.6338 (5) | 0.0421 (5) | |
| C4 | 0.91691 (13) | 0.8460 (2) | 0.5166 (4) | 0.0451 (6) | |
| C3 | 0.90038 (15) | 0.8322 (3) | 0.2772 (5) | 0.0635 (8) | |
| H3A | 0.9239 | 0.7634 | 0.2189 | 0.095* | |
| H3B | 0.9128 | 0.9056 | 0.2019 | 0.095* | |
| H3C | 0.8541 | 0.8188 | 0.2610 | 0.095* | |
| C2 | 0.87985 (15) | 0.9559 (2) | 0.6113 (7) | 0.0733 (8) | |
| H2B | 0.8905 | 0.9641 | 0.7611 | 0.110* | |
| H2C | 0.8335 | 0.9430 | 0.5958 | 0.110* | |
| H2D | 0.8923 | 1.0294 | 0.5363 | 0.110* | |
| C1 | 0.99039 (14) | 0.8627 (2) | 0.5451 (6) | 0.0625 (8) | |
| H1B | 1.0130 | 0.7938 | 0.4834 | 0.094* | |
| H1C | 1.0005 | 0.8681 | 0.6957 | 0.094* | |
| H1D | 1.0041 | 0.9368 | 0.4742 | 0.094* |
| S1 | 0.0528 (3) | 0.0349 (3) | 0.0446 (3) | 0.0050 (2) | 0.0020 (3) | 0.0025 (3) |
| O3 | 0.124 (2) | 0.0680 (13) | 0.0885 (16) | −0.0522 (13) | 0.0132 (15) | −0.0002 (13) |
| O2 | 0.0909 (15) | 0.0660 (12) | 0.0804 (15) | −0.0173 (10) | −0.0336 (15) | 0.0052 (14) |
| O1 | 0.0707 (13) | 0.0443 (10) | 0.0930 (16) | 0.0126 (9) | 0.0308 (12) | 0.0156 (10) |
| N2 | 0.0457 (10) | 0.0311 (9) | 0.0497 (11) | 0.0041 (8) | 0.0075 (10) | 0.0086 (8) |
| N1 | 0.0440 (10) | 0.0325 (9) | 0.0416 (13) | −0.0003 (7) | 0.0044 (10) | 0.0064 (8) |
| C11 | 0.0378 (12) | 0.0376 (12) | 0.0488 (14) | −0.0003 (10) | 0.0062 (11) | 0.0013 (11) |
| C10 | 0.0557 (14) | 0.0387 (11) | 0.0526 (14) | −0.0019 (10) | 0.0128 (15) | 0.0136 (15) |
| C9 | 0.0650 (16) | 0.0508 (14) | 0.0404 (13) | 0.0030 (13) | −0.0015 (12) | 0.0109 (12) |
| C8 | 0.0488 (12) | 0.0427 (11) | 0.0474 (13) | −0.0016 (9) | −0.0003 (15) | −0.0004 (14) |
| C7 | 0.0396 (13) | 0.0366 (12) | 0.0399 (13) | 0.0020 (9) | 0.0051 (10) | 0.0043 (10) |
| C12 | 0.0423 (13) | 0.0409 (12) | 0.0409 (13) | 0.0024 (10) | 0.0016 (11) | 0.0056 (11) |
| N3 | 0.0540 (13) | 0.0435 (12) | 0.0695 (16) | −0.0055 (10) | 0.0068 (12) | −0.0009 (11) |
| C6 | 0.0391 (11) | 0.0367 (12) | 0.0366 (14) | −0.0034 (10) | −0.0084 (9) | 0.0029 (9) |
| C5 | 0.0441 (12) | 0.0350 (10) | 0.0471 (12) | 0.0004 (9) | 0.0006 (13) | 0.0067 (13) |
| C4 | 0.0520 (15) | 0.0313 (11) | 0.0519 (15) | −0.0003 (11) | 0.0008 (12) | 0.0078 (10) |
| C3 | 0.0761 (19) | 0.0570 (16) | 0.0575 (19) | −0.0034 (14) | −0.0070 (15) | 0.0183 (14) |
| C2 | 0.093 (2) | 0.0359 (12) | 0.091 (2) | 0.0162 (13) | 0.020 (2) | 0.0097 (18) |
| C1 | 0.0643 (18) | 0.0414 (14) | 0.082 (2) | −0.0118 (13) | −0.0026 (15) | 0.0018 (13) |
| S1—C6 | 1.668 (2) | C8—C7 | 1.381 (4) |
| O3—N3 | 1.217 (3) | C8—H8A | 0.9300 |
| O2—N3 | 1.216 (3) | C7—C12 | 1.371 (3) |
| O1—C5 | 1.222 (3) | C12—H12A | 0.9300 |
| N2—C6 | 1.327 (3) | C5—C4 | 1.523 (3) |
| N2—C7 | 1.435 (3) | C4—C1 | 1.520 (4) |
| N2—H2A | 0.8600 | C4—C3 | 1.532 (4) |
| N1—C5 | 1.377 (3) | C4—C2 | 1.532 (4) |
| N1—C6 | 1.386 (3) | C3—H3A | 0.9600 |
| N1—H1A | 0.8600 | C3—H3B | 0.9600 |
| C11—C10 | 1.375 (4) | C3—H3C | 0.9600 |
| C11—C12 | 1.375 (3) | C2—H2B | 0.9600 |
| C11—N3 | 1.472 (3) | C2—H2C | 0.9600 |
| C10—C9 | 1.370 (4) | C2—H2D | 0.9600 |
| C10—H10A | 0.9300 | C1—H1B | 0.9600 |
| C9—C8 | 1.384 (3) | C1—H1C | 0.9600 |
| C9—H9A | 0.9300 | C1—H1D | 0.9600 |
| C6—N2—C7 | 123.23 (18) | N1—C6—S1 | 119.22 (17) |
| C6—N2—H2A | 118.4 | O1—C5—N1 | 121.3 (2) |
| C7—N2—H2A | 118.4 | O1—C5—C4 | 121.9 (2) |
| C5—N1—C6 | 128.0 (2) | N1—C5—C4 | 116.8 (2) |
| C5—N1—H1A | 116.0 | C1—C4—C5 | 110.3 (2) |
| C6—N1—H1A | 116.0 | C1—C4—C3 | 110.0 (2) |
| C10—C11—C12 | 122.7 (2) | C5—C4—C3 | 108.4 (2) |
| C10—C11—N3 | 118.8 (2) | C1—C4—C2 | 110.4 (2) |
| C12—C11—N3 | 118.6 (2) | C5—C4—C2 | 107.8 (2) |
| C9—C10—C11 | 118.2 (2) | C3—C4—C2 | 109.9 (3) |
| C9—C10—H10A | 120.9 | C4—C3—H3A | 109.5 |
| C11—C10—H10A | 120.9 | C4—C3—H3B | 109.5 |
| C10—C9—C8 | 120.9 (3) | H3A—C3—H3B | 109.5 |
| C10—C9—H9A | 119.5 | C4—C3—H3C | 109.5 |
| C8—C9—H9A | 119.5 | H3A—C3—H3C | 109.5 |
| C7—C8—C9 | 119.0 (2) | H3B—C3—H3C | 109.5 |
| C7—C8—H8A | 120.5 | C4—C2—H2B | 109.5 |
| C9—C8—H8A | 120.5 | C4—C2—H2C | 109.5 |
| C12—C7—C8 | 121.3 (2) | H2B—C2—H2C | 109.5 |
| C12—C7—N2 | 119.6 (2) | C4—C2—H2D | 109.5 |
| C8—C7—N2 | 119.1 (2) | H2B—C2—H2D | 109.5 |
| C7—C12—C11 | 117.9 (2) | H2C—C2—H2D | 109.5 |
| C7—C12—H12A | 121.1 | C4—C1—H1B | 109.5 |
| C11—C12—H12A | 121.1 | C4—C1—H1C | 109.5 |
| O2—N3—O3 | 123.7 (3) | H1B—C1—H1C | 109.5 |
| O2—N3—C11 | 118.3 (2) | C4—C1—H1D | 109.5 |
| O3—N3—C11 | 118.0 (3) | H1B—C1—H1D | 109.5 |
| N2—C6—N1 | 116.21 (19) | H1C—C1—H1D | 109.5 |
| N2—C6—S1 | 124.57 (17) | ||
| C12—C11—C10—C9 | −1.5 (4) | C10—C11—N3—O3 | 3.4 (3) |
| N3—C11—C10—C9 | 179.4 (2) | C12—C11—N3—O3 | −175.7 (2) |
| C11—C10—C9—C8 | 1.2 (4) | C7—N2—C6—N1 | 178.4 (2) |
| C10—C9—C8—C7 | −0.6 (4) | C7—N2—C6—S1 | −2.2 (3) |
| C9—C8—C7—C12 | 0.2 (4) | C5—N1—C6—N2 | 2.6 (4) |
| C9—C8—C7—N2 | 177.6 (2) | C5—N1—C6—S1 | −176.9 (2) |
| C6—N2—C7—C12 | −87.3 (3) | C6—N1—C5—O1 | −2.1 (4) |
| C6—N2—C7—C8 | 95.2 (3) | C6—N1—C5—C4 | 177.8 (2) |
| C8—C7—C12—C11 | −0.4 (3) | O1—C5—C4—C1 | 130.5 (3) |
| N2—C7—C12—C11 | −177.81 (19) | N1—C5—C4—C1 | −49.4 (3) |
| C10—C11—C12—C7 | 1.0 (3) | O1—C5—C4—C3 | −109.0 (3) |
| N3—C11—C12—C7 | −179.9 (2) | N1—C5—C4—C3 | 71.1 (3) |
| C10—C11—N3—O2 | −174.3 (2) | O1—C5—C4—C2 | 9.9 (4) |
| C12—C11—N3—O2 | 6.6 (3) | N1—C5—C4—C2 | −170.0 (2) |
| H··· | ||||
| N2—H2A···O1 | 0.86 | 1.92 | 2.605 (3) | 135 |
| N1—H1A···S1i | 0.86 | 2.76 | 3.582 (2) | 160 |
| C3—H3A···S1i | 0.96 | 2.83 | 3.742 (3) | 159 |
| N2—H2A···O2ii | 0.86 | 2.52 | 3.197 (3) | 137 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 | 1.92 | 2.605 (3) | 135 |
| N1—H1 | 0.86 | 2.76 | 3.582 (2) | 160 |
| C3—H3 | 0.96 | 2.83 | 3.742 (3) | 159 |
| N2—H2 | 0.86 | 2.52 | 3.197 (3) | 137 |
Symmetry codes: (i) ; (ii) .