Literature DB >> 21202646

N-(3-Nitro-phen-yl)-N'-pivaloylthio-urea.

M Sukeri M Yusof, Siti Hajar Muharam, M B Kassim, Bohari M Yamin.   

Abstract

In the title compound, C(12)H(15)N(3)O(3)S, there is an intra-molecular N-H⋯O hydrogen bond. The crystal structure is stabilized by inter-molecular N-H⋯O, N-H⋯S and C-H⋯S hydrogen bonds, forming a two-dimensional network parallel to the ac plane.

Entities:  

Year:  2008        PMID: 21202646      PMCID: PMC2961577          DOI: 10.1107/S1600536808014530

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related crystal structures, see: Saeed & Flörke (2007 ▶); Sultana et al. (2007 ▶).

Experimental

Crystal data

C12H15N3O3S M = 281.33 Orthorhombic, a = 20.400 (5) Å b = 10.886 (3) Å c = 6.2120 (15) Å V = 1379.5 (6) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 273 (2) K 0.48 × 0.18 × 0.12 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.893, T max = 0.972 8152 measured reflections 3020 independent reflections 2321 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.103 S = 0.91 3020 reflections 172 parameters 1 restraint H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.14 e Å−3 Absolute structure: Flack (1983 ▶), 1296 Friedel pairs Flack parameter: 0.07 (9) Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808014530/sg2240sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808014530/sg2240Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H15N3O3SF000 = 592
Mr = 281.33Dx = 1.355 Mg m3
Orthorhombic, Pna21Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 925 reflections
a = 20.400 (5) Åθ = 2.0–27.5º
b = 10.886 (3) ŵ = 0.24 mm1
c = 6.2120 (15) ÅT = 273 (2) K
V = 1379.5 (6) Å3Block, colourless
Z = 40.48 × 0.18 × 0.12 mm
Bruker SMART APEX CCD area-detector diffractometer3020 independent reflections
Radiation source: fine-focus sealed tube2321 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.032
Detector resolution: 83.66 pixels mm-1θmax = 27.5º
T = 298(2) Kθmin = 2.0º
ω scansh = −21→26
Absorption correction: multi-scan(SADABS; Bruker, 2000)k = −13→14
Tmin = 0.893, Tmax = 0.972l = −7→7
8152 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.042  w = 1/[σ2(Fo2) + (0.0642P)2 + 0.0515P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.103(Δ/σ)max < 0.001
S = 0.91Δρmax = 0.28 e Å3
3020 reflectionsΔρmin = −0.14 e Å3
172 parametersExtinction correction: none
1 restraintAbsolute structure: Flack (1983), 1296 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.07 (9)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.97040 (3)0.39600 (5)0.62603 (13)0.04412 (17)
O30.72971 (13)0.0240 (2)0.9230 (4)0.0936 (8)
O20.73374 (10)0.13216 (17)0.6346 (5)0.0791 (6)
O10.84682 (10)0.73243 (15)0.7556 (4)0.0694 (6)
N20.86872 (9)0.49974 (16)0.8218 (3)0.0422 (5)
H2A0.84560.56400.84800.051*
N10.92866 (9)0.62483 (14)0.5965 (3)0.0394 (5)
H1A0.96030.63040.50550.047*
C110.79218 (11)0.2008 (2)0.9299 (4)0.0414 (5)
C100.81336 (11)0.1747 (2)1.1350 (5)0.0490 (6)
H10A0.79990.10351.20520.059*
C90.85486 (13)0.2563 (2)1.2331 (5)0.0521 (6)
H9A0.87040.23951.37080.062*
C80.87392 (11)0.36328 (19)1.1304 (5)0.0463 (5)
H8A0.90180.41871.19850.056*
C70.85101 (11)0.38661 (19)0.9253 (4)0.0387 (5)
C120.80979 (11)0.3062 (2)0.8226 (4)0.0413 (5)
H12A0.79420.32240.68480.050*
N30.74809 (11)0.11334 (19)0.8218 (5)0.0557 (6)
C60.91904 (11)0.50999 (19)0.6876 (4)0.0375 (5)
C50.89385 (11)0.73105 (18)0.6338 (5)0.0421 (5)
C40.91691 (13)0.8460 (2)0.5166 (4)0.0451 (6)
C30.90038 (15)0.8322 (3)0.2772 (5)0.0635 (8)
H3A0.92390.76340.21890.095*
H3B0.91280.90560.20190.095*
H3C0.85410.81880.26100.095*
C20.87985 (15)0.9559 (2)0.6113 (7)0.0733 (8)
H2B0.89050.96410.76110.110*
H2C0.83350.94300.59580.110*
H2D0.89231.02940.53630.110*
C10.99039 (14)0.8627 (2)0.5451 (6)0.0625 (8)
H1B1.01300.79380.48340.094*
H1C1.00050.86810.69570.094*
H1D1.00410.93680.47420.094*
U11U22U33U12U13U23
S10.0528 (3)0.0349 (3)0.0446 (3)0.0050 (2)0.0020 (3)0.0025 (3)
O30.124 (2)0.0680 (13)0.0885 (16)−0.0522 (13)0.0132 (15)−0.0002 (13)
O20.0909 (15)0.0660 (12)0.0804 (15)−0.0173 (10)−0.0336 (15)0.0052 (14)
O10.0707 (13)0.0443 (10)0.0930 (16)0.0126 (9)0.0308 (12)0.0156 (10)
N20.0457 (10)0.0311 (9)0.0497 (11)0.0041 (8)0.0075 (10)0.0086 (8)
N10.0440 (10)0.0325 (9)0.0416 (13)−0.0003 (7)0.0044 (10)0.0064 (8)
C110.0378 (12)0.0376 (12)0.0488 (14)−0.0003 (10)0.0062 (11)0.0013 (11)
C100.0557 (14)0.0387 (11)0.0526 (14)−0.0019 (10)0.0128 (15)0.0136 (15)
C90.0650 (16)0.0508 (14)0.0404 (13)0.0030 (13)−0.0015 (12)0.0109 (12)
C80.0488 (12)0.0427 (11)0.0474 (13)−0.0016 (9)−0.0003 (15)−0.0004 (14)
C70.0396 (13)0.0366 (12)0.0399 (13)0.0020 (9)0.0051 (10)0.0043 (10)
C120.0423 (13)0.0409 (12)0.0409 (13)0.0024 (10)0.0016 (11)0.0056 (11)
N30.0540 (13)0.0435 (12)0.0695 (16)−0.0055 (10)0.0068 (12)−0.0009 (11)
C60.0391 (11)0.0367 (12)0.0366 (14)−0.0034 (10)−0.0084 (9)0.0029 (9)
C50.0441 (12)0.0350 (10)0.0471 (12)0.0004 (9)0.0006 (13)0.0067 (13)
C40.0520 (15)0.0313 (11)0.0519 (15)−0.0003 (11)0.0008 (12)0.0078 (10)
C30.0761 (19)0.0570 (16)0.0575 (19)−0.0034 (14)−0.0070 (15)0.0183 (14)
C20.093 (2)0.0359 (12)0.091 (2)0.0162 (13)0.020 (2)0.0097 (18)
C10.0643 (18)0.0414 (14)0.082 (2)−0.0118 (13)−0.0026 (15)0.0018 (13)
S1—C61.668 (2)C8—C71.381 (4)
O3—N31.217 (3)C8—H8A0.9300
O2—N31.216 (3)C7—C121.371 (3)
O1—C51.222 (3)C12—H12A0.9300
N2—C61.327 (3)C5—C41.523 (3)
N2—C71.435 (3)C4—C11.520 (4)
N2—H2A0.8600C4—C31.532 (4)
N1—C51.377 (3)C4—C21.532 (4)
N1—C61.386 (3)C3—H3A0.9600
N1—H1A0.8600C3—H3B0.9600
C11—C101.375 (4)C3—H3C0.9600
C11—C121.375 (3)C2—H2B0.9600
C11—N31.472 (3)C2—H2C0.9600
C10—C91.370 (4)C2—H2D0.9600
C10—H10A0.9300C1—H1B0.9600
C9—C81.384 (3)C1—H1C0.9600
C9—H9A0.9300C1—H1D0.9600
C6—N2—C7123.23 (18)N1—C6—S1119.22 (17)
C6—N2—H2A118.4O1—C5—N1121.3 (2)
C7—N2—H2A118.4O1—C5—C4121.9 (2)
C5—N1—C6128.0 (2)N1—C5—C4116.8 (2)
C5—N1—H1A116.0C1—C4—C5110.3 (2)
C6—N1—H1A116.0C1—C4—C3110.0 (2)
C10—C11—C12122.7 (2)C5—C4—C3108.4 (2)
C10—C11—N3118.8 (2)C1—C4—C2110.4 (2)
C12—C11—N3118.6 (2)C5—C4—C2107.8 (2)
C9—C10—C11118.2 (2)C3—C4—C2109.9 (3)
C9—C10—H10A120.9C4—C3—H3A109.5
C11—C10—H10A120.9C4—C3—H3B109.5
C10—C9—C8120.9 (3)H3A—C3—H3B109.5
C10—C9—H9A119.5C4—C3—H3C109.5
C8—C9—H9A119.5H3A—C3—H3C109.5
C7—C8—C9119.0 (2)H3B—C3—H3C109.5
C7—C8—H8A120.5C4—C2—H2B109.5
C9—C8—H8A120.5C4—C2—H2C109.5
C12—C7—C8121.3 (2)H2B—C2—H2C109.5
C12—C7—N2119.6 (2)C4—C2—H2D109.5
C8—C7—N2119.1 (2)H2B—C2—H2D109.5
C7—C12—C11117.9 (2)H2C—C2—H2D109.5
C7—C12—H12A121.1C4—C1—H1B109.5
C11—C12—H12A121.1C4—C1—H1C109.5
O2—N3—O3123.7 (3)H1B—C1—H1C109.5
O2—N3—C11118.3 (2)C4—C1—H1D109.5
O3—N3—C11118.0 (3)H1B—C1—H1D109.5
N2—C6—N1116.21 (19)H1C—C1—H1D109.5
N2—C6—S1124.57 (17)
C12—C11—C10—C9−1.5 (4)C10—C11—N3—O33.4 (3)
N3—C11—C10—C9179.4 (2)C12—C11—N3—O3−175.7 (2)
C11—C10—C9—C81.2 (4)C7—N2—C6—N1178.4 (2)
C10—C9—C8—C7−0.6 (4)C7—N2—C6—S1−2.2 (3)
C9—C8—C7—C120.2 (4)C5—N1—C6—N22.6 (4)
C9—C8—C7—N2177.6 (2)C5—N1—C6—S1−176.9 (2)
C6—N2—C7—C12−87.3 (3)C6—N1—C5—O1−2.1 (4)
C6—N2—C7—C895.2 (3)C6—N1—C5—C4177.8 (2)
C8—C7—C12—C11−0.4 (3)O1—C5—C4—C1130.5 (3)
N2—C7—C12—C11−177.81 (19)N1—C5—C4—C1−49.4 (3)
C10—C11—C12—C71.0 (3)O1—C5—C4—C3−109.0 (3)
N3—C11—C12—C7−179.9 (2)N1—C5—C4—C371.1 (3)
C10—C11—N3—O2−174.3 (2)O1—C5—C4—C29.9 (4)
C12—C11—N3—O26.6 (3)N1—C5—C4—C2−170.0 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.861.922.605 (3)135
N1—H1A···S1i0.862.763.582 (2)160
C3—H3A···S1i0.962.833.742 (3)159
N2—H2A···O2ii0.862.523.197 (3)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O10.861.922.605 (3)135
N1—H1A⋯S1i0.862.763.582 (2)160
C3—H3A⋯S1i0.962.833.742 (3)159
N2—H2A⋯O2ii0.862.523.197 (3)137

Symmetry codes: (i) ; (ii) .

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1.  1-(2-Chloro-5-nitro-phen-yl)-3-(2,2-di-methyl-propion-yl)thio-urea.

Authors:  Aamer Saeed; Rasheed Ahmad Khera; Jim Simpson; Roderick G Stanley
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-01

2.  4-Chloro-N-[N-(6-methyl-2-pyrid-yl)car-bamo-thio-yl]benzamide.

Authors:  Gün Binzet; Fatih Mehmet Emen; Ulrich Flörke; Tuncay Yeşilkaynak; Nevzat Külcü; Hakan Arslan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-10

3.  N-(2,2-Dimethyl-propano-yl)-N'-(2-meth-oxy-phen-yl)thio-urea.

Authors:  Maisara A Kadir; Bohari M Yamin; M Sukeri M Yusof
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-21

4.  4-Methyl-N-[2-(pyridin-2-yl)ethyl-carbamo-thio-yl]benzamide.

Authors:  Farook Adam; Nadiah Ameram; Naser Eltaher Eltayeb
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-07-31
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