Literature DB >> 25844197

Crystal structure of 4-methyl-N-[(4-methyl-pyridin-2-yl)carbamo-thioyl]-benzamide.

Farook Adam1, Nadiah Ameram1, Naser Eltaher Eltayeb2.   

Abstract

In the title compound, C15H15N3OS, the dihedral angle between the planes of the benzene and pyridine rings is 26.86 (9)°. Intra-molecular N-H⋯O and C-H⋯S hydrogen bonds both generate S(6) rings. The C=O and C=S bonds lie to opposite sides of the mol-ecule. In the crystal, inversion dimers linked by pairs of N-H⋯S hydrogen bonds generate R 2 (2)(8) loops.

Entities:  

Keywords:  benzamide; crystal structure; hydrogen bonding; thio­carbonyl groups; thio­urea compounds

Year:  2015        PMID: 25844197      PMCID: PMC4350712          DOI: 10.1107/S2056989015003412

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

The role of benzoyl thio­urea derivatives in coordination chemistry has been extensively studied and quite satisfactorily elucidated. As benzoyl thio­ureas have suitable C=O and C=S functional groups, they can be considered as useful chelating agents due to their ability to encapsulate metal ions into their coordinating moiety. Thio­urea and its derivatives have found extensive applications in the fields of medicine, agriculture and analytical chemistry. Thio­ureas are also known to exhibit a wide range of biological activities including anti­cancer (Saeed et al., 2010a ▸), anti­fungal (Saeed et al., 2010b ▸) and as agrochemicals (Xu et al., 2003 ▸). As part of our studies in this area, we now describe the synthesis and structure of the title compound, (I).

Structural commentary

The title compound (Fig. 1 ▸) is a benzoyl thio­urea derivative and analogous to a compound recently reported by us (Adam et al., 2014 ▸), except that the other substituent is changed to methyl­pyridine and the thio­urea moiety is still in a para position. The dihedral angle between the planes of the benzene and pyridine rings is 26.86 (9)°. The C=O bond length of 1.225 (2) Å is comparable to that observed in N-benzoyl-N′-phenyl­thio­urea (Hassan et al., 2008a ▸). The C—N bond lengths are in the range 1.328 (2)–1.417 (2) Å, shorter than the normal single C—N bond length (1.469 Å), indicating partial double-bond character owing to the resonance effect at the carbonyl­thio­urea moiety.
Figure 1

The mol­ecular structure of the title compound, with 50% probability displacement ellipsoids. Hydrogen bonds are shown as dashed lines.

As in most benzoyl thio­urea derivatives, an intra­molecular N—H⋯O hydrogen bond leads to the formation of an S(6) ring, namely, C7/N1/C8/N2/H2/O1. An intra­molecular C—H⋯S inter­action (C9/N2/C8/S1/H10/C10) also generates an S(6) ring (Fig. 1 ▸, Table 1 ▸).
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N2H1N2O10.82(2)1.94(2)2.644(2)144(2)
N1H1N1S1i 0.81(2)2.74(2)3.511(2)158(2)
C10H10AS10.932.573.221(2)127

Symmetry code: (i) .

Supra­molecular features

In the crystal of (I), inversion dimers linked by pairs of N—H⋯S hydrogen bonds (Table 1 ▸, Fig. 2 ▸) generate (8) loops. As free rotation about the N1—C7 and N2—C8 single bonds is hindered, the C=O and C=S bonds are unlikely to align at the same side of the mol­ecule in order to form a chelate with a metal ion.
Figure 2

The crystal packing of the title compound viewed down the c axis. Hydrogen bonds are shown as dashed lines.

Synthesis and crystallization

The title compound was prepared according to a slight modification of the method described by Hassan et al. (2008b ▸). p-Benzoyl chloride (13 mmol) was added dropwise to a stirred acetone solution (30 ml) of ammonium thio­cyanate (13 mmol). The mixture was stirred for 10 min. A solution of 2-amino-4-picoline in acetone was added and the reaction mixture was refluxed for 3 h, after which the solution was poured into a beaker containing some ice cubes. The resulting precipitate was collected by filtration, washed several times with a cold ethanol/water mixture and purified by recrystallization from an ethanol solution.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. The H-atoms on the N atoms were located in a difference-Fourier map and were freely refined. All other H atoms were positioned geometrically and refined using a riding model with C—H = 0.93–0.96 Å and U iso(H) = 1.2U eq(aromatic C) or 1.5U eq(methyl C).
Table 2

Experimental details

Crystal data
Chemical formulaC15H15N3OS
M r 285.36
Crystal system, space groupMonoclinic, P21/c
Temperature (K)294
a, b, c ()11.5297(12), 6.1860(6), 20.657(2)
()101.431(2)
V (3)1444.1(3)
Z 4
Radiation typeMo K
(mm1)0.22
Crystal size (mm)0.38 0.34 0.09
 
Data collection
DiffractometerBruker APEXII CCD
Absorption correctionMulti-scan (SADABS; Bruker, 2005)
T min, T max 0.920, 0.981
No. of measured, independent and observed [I > 2(I)] reflections15813, 4233, 2790
R int 0.028
(sin /)max (1)0.706
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.048, 0.164, 1.05
No. of reflections4233
No. of parameters191
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
max, min (e 3)0.27, 0.19

Computer programs: APEX2 and SAINT (Bruker, 2005 ▸), SHELXTL (Sheldrick, 2008 ▸) and PLATON (Spek, 2009 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015003412/hb7367sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015003412/hb7367Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015003412/hb7367Isup3.cml CCDC reference: 1050132 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H15N3OSF(000) = 600
Mr = 285.36Dx = 1.313 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3960 reflections
a = 11.5297 (12) Åθ = 2.4–25.9°
b = 6.1860 (6) ŵ = 0.22 mm1
c = 20.657 (2) ÅT = 294 K
β = 101.431 (2)°Plate, colourless
V = 1444.1 (3) Å30.38 × 0.34 × 0.09 mm
Z = 4
Bruker APEXII CCD diffractometer4233 independent reflections
Radiation source: fine-focus sealed tube2790 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
φ and ω scansθmax = 30.1°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −16→16
Tmin = 0.920, Tmax = 0.981k = −8→8
15813 measured reflectionsl = −29→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.164H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0866P)2 + 0.1249P] where P = (Fo2 + 2Fc2)/3
4233 reflections(Δ/σ)max < 0.001
191 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.47752 (4)0.82687 (9)0.41107 (2)0.0655 (2)
O10.10758 (10)1.0358 (2)0.43058 (7)0.0664 (4)
N10.30931 (13)1.0520 (2)0.44717 (7)0.0489 (3)
N20.24183 (13)0.7757 (3)0.37524 (7)0.0499 (3)
N30.11827 (13)0.5315 (3)0.31789 (8)0.0656 (4)
C10.11290 (16)1.3270 (3)0.53813 (9)0.0549 (4)
H1A0.05141.22710.53170.066*
C20.11387 (17)1.4947 (3)0.58230 (9)0.0618 (5)
H2A0.05341.50490.60600.074*
C30.20271 (18)1.6472 (3)0.59200 (9)0.0585 (5)
C40.29222 (18)1.6283 (3)0.55643 (9)0.0595 (5)
H4A0.35251.73060.56220.071*
C50.29362 (16)1.4598 (3)0.51247 (8)0.0525 (4)
H5A0.35471.44920.48920.063*
C60.20408 (14)1.3073 (3)0.50317 (8)0.0463 (4)
C70.20039 (14)1.1224 (3)0.45721 (8)0.0481 (4)
C80.33584 (14)0.8813 (3)0.40921 (7)0.0456 (4)
C90.23136 (14)0.5873 (3)0.33544 (7)0.0485 (4)
C100.32251 (15)0.4763 (3)0.31581 (8)0.0546 (4)
H10A0.40040.52240.32920.065*
C110.29672 (18)0.2966 (3)0.27621 (8)0.0549 (4)
C120.18012 (19)0.2358 (4)0.25798 (10)0.0673 (5)
H12A0.15910.11460.23160.081*
C130.0953 (2)0.3570 (4)0.27931 (12)0.0766 (6)
H13A0.01670.31500.26610.092*
C140.2033 (3)1.8322 (4)0.64013 (11)0.0836 (7)
H14A0.27081.92280.63970.125*
H14B0.20731.77540.68380.125*
H14C0.13221.91560.62740.125*
C150.3924 (2)0.1738 (4)0.25264 (13)0.0834 (7)
H15A0.46360.17850.28580.125*
H15B0.40680.23800.21260.125*
H15C0.36820.02620.24430.125*
H1N20.181 (2)0.810 (4)0.3871 (12)0.083 (7)*
H1N10.3673 (18)1.100 (3)0.4720 (10)0.055 (5)*
U11U22U33U12U13U23
S10.0427 (3)0.0886 (4)0.0651 (3)−0.0032 (2)0.0107 (2)−0.0266 (2)
O10.0437 (7)0.0727 (10)0.0793 (9)0.0008 (6)0.0035 (6)−0.0220 (7)
N10.0440 (7)0.0525 (9)0.0488 (7)−0.0028 (6)0.0057 (6)−0.0086 (6)
N20.0429 (7)0.0548 (9)0.0498 (7)0.0016 (6)0.0040 (6)−0.0088 (6)
N30.0508 (8)0.0691 (11)0.0723 (10)−0.0025 (8)0.0012 (7)−0.0189 (8)
C10.0478 (9)0.0604 (11)0.0555 (9)0.0019 (8)0.0083 (7)−0.0018 (8)
C20.0624 (11)0.0725 (13)0.0510 (9)0.0149 (10)0.0124 (8)−0.0027 (8)
C30.0731 (12)0.0516 (11)0.0464 (9)0.0149 (9)0.0011 (8)0.0002 (7)
C40.0701 (12)0.0457 (10)0.0602 (10)−0.0014 (9)0.0066 (9)0.0008 (8)
C50.0597 (10)0.0466 (10)0.0520 (9)0.0011 (8)0.0127 (7)0.0038 (7)
C60.0475 (8)0.0447 (9)0.0452 (8)0.0044 (7)0.0053 (6)0.0016 (6)
C70.0454 (8)0.0494 (10)0.0480 (8)0.0005 (7)0.0054 (7)−0.0004 (7)
C80.0457 (8)0.0501 (9)0.0401 (7)−0.0016 (7)0.0064 (6)−0.0001 (6)
C90.0495 (9)0.0526 (10)0.0407 (7)−0.0004 (7)0.0029 (6)−0.0006 (7)
C100.0548 (10)0.0566 (11)0.0534 (9)−0.0008 (8)0.0131 (7)−0.0033 (8)
C110.0730 (12)0.0469 (10)0.0460 (8)0.0014 (8)0.0148 (8)0.0007 (7)
C120.0770 (13)0.0601 (12)0.0648 (11)−0.0072 (10)0.0138 (10)−0.0136 (9)
C130.0624 (12)0.0760 (15)0.0862 (14)−0.0093 (10)0.0022 (10)−0.0282 (12)
C140.114 (2)0.0673 (15)0.0669 (13)0.0168 (12)0.0112 (13)−0.0144 (10)
C150.0940 (17)0.0733 (16)0.0907 (16)0.0025 (12)0.0374 (14)−0.0172 (12)
S1—C81.6609 (16)C4—H4A0.9300
O1—C71.225 (2)C5—C61.384 (2)
N1—C71.383 (2)C5—H5A0.9300
N1—C81.385 (2)C6—C71.482 (2)
N1—H1N10.81 (2)C9—C101.382 (2)
N2—C81.339 (2)C10—C111.377 (3)
N2—C91.417 (2)C10—H10A0.9300
N2—H1N20.82 (2)C11—C121.375 (3)
N3—C91.328 (2)C11—C151.498 (3)
N3—C131.337 (3)C12—C131.373 (3)
C1—C21.380 (3)C12—H12A0.9300
C1—C61.394 (2)C13—H13A0.9300
C1—H1A0.9300C14—H14A0.9600
C2—C31.378 (3)C14—H14B0.9600
C2—H2A0.9300C14—H14C0.9600
C3—C41.385 (3)C15—H15A0.9600
C3—C141.515 (3)C15—H15B0.9600
C4—C51.385 (3)C15—H15C0.9600
C7—N1—C8129.34 (15)N2—C8—S1127.11 (13)
C7—N1—H1N1116.6 (14)N1—C8—S1117.91 (12)
C8—N1—H1N1112.9 (14)N3—C9—C10123.61 (16)
C8—N2—C9132.25 (15)N3—C9—N2109.77 (15)
C8—N2—H1N2111.7 (17)C10—C9—N2126.61 (15)
C9—N2—H1N2114.2 (17)C11—C10—C9119.22 (17)
C9—N3—C13116.14 (17)C11—C10—H10A120.4
C2—C1—C6120.01 (18)C9—C10—H10A120.4
C2—C1—H1A120.0C12—C11—C10117.90 (18)
C6—C1—H1A120.0C12—C11—C15121.03 (18)
C3—C2—C1121.29 (17)C10—C11—C15121.07 (19)
C3—C2—H2A119.4C13—C12—C11118.87 (19)
C1—C2—H2A119.4C13—C12—H12A120.6
C2—C3—C4118.38 (17)C11—C12—H12A120.6
C2—C3—C14121.3 (2)N3—C13—C12124.3 (2)
C4—C3—C14120.3 (2)N3—C13—H13A117.9
C5—C4—C3121.21 (18)C12—C13—H13A117.9
C5—C4—H4A119.4C3—C14—H14A109.5
C3—C4—H4A119.4C3—C14—H14B109.5
C6—C5—C4119.94 (17)H14A—C14—H14B109.5
C6—C5—H5A120.0C3—C14—H14C109.5
C4—C5—H5A120.0H14A—C14—H14C109.5
C5—C6—C1119.15 (16)H14B—C14—H14C109.5
C5—C6—C7122.77 (15)C11—C15—H15A109.5
C1—C6—C7118.08 (15)C11—C15—H15B109.5
O1—C7—N1122.22 (16)H15A—C15—H15B109.5
O1—C7—C6122.46 (15)C11—C15—H15C109.5
N1—C7—C6115.31 (15)H15A—C15—H15C109.5
N2—C8—N1114.97 (14)H15B—C15—H15C109.5
C6—C1—C2—C31.2 (3)C9—N2—C8—N1−174.80 (16)
C1—C2—C3—C4−0.3 (3)C9—N2—C8—S14.2 (3)
C1—C2—C3—C14179.57 (18)C7—N1—C8—N23.2 (3)
C2—C3—C4—C5−0.5 (3)C7—N1—C8—S1−175.97 (14)
C14—C3—C4—C5179.64 (17)C13—N3—C9—C100.3 (3)
C3—C4—C5—C60.4 (3)C13—N3—C9—N2179.18 (18)
C4—C5—C6—C10.5 (3)C8—N2—C9—N3173.13 (18)
C4—C5—C6—C7−179.68 (16)C8—N2—C9—C10−8.0 (3)
C2—C1—C6—C5−1.2 (3)N3—C9—C10—C11−0.4 (3)
C2—C1—C6—C7178.91 (16)N2—C9—C10—C11−179.18 (16)
C8—N1—C7—O1−1.1 (3)C9—C10—C11—C120.0 (3)
C8—N1—C7—C6177.94 (15)C9—C10—C11—C15178.80 (19)
C5—C6—C7—O1−152.85 (18)C10—C11—C12—C130.7 (3)
C1—C6—C7—O127.0 (2)C15—C11—C12—C13−178.2 (2)
C5—C6—C7—N128.1 (2)C9—N3—C13—C120.4 (4)
C1—C6—C7—N1−152.03 (16)C11—C12—C13—N3−0.9 (4)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O10.82 (2)1.94 (2)2.644 (2)144 (2)
N1—H1N1···S1i0.81 (2)2.74 (2)3.5106 (15)157.8 (18)
C10—H10A···S10.932.573.2211 (19)127
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Propyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-09

3.  Ethyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-09

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

5.  4-Methyl-N-[2-(pyridin-2-yl)ethyl-carbamo-thio-yl]benzamide.

Authors:  Farook Adam; Nadiah Ameram; Naser Eltaher Eltayeb
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-07-31
  5 in total

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