| Literature DB >> 25844197 |
Farook Adam1, Nadiah Ameram1, Naser Eltaher Eltayeb2.
Abstract
In the title compound, C15H15N3OS, the dihedral angle between the planes of the benzene and pyridine rings is 26.86 (9)°. Intra-molecular N-H⋯O and C-H⋯S hydrogen bonds both generate S(6) rings. The C=O and C=S bonds lie to opposite sides of the mol-ecule. In the crystal, inversion dimers linked by pairs of N-H⋯S hydrogen bonds generate R 2 (2)(8) loops.Entities:
Keywords: benzamide; crystal structure; hydrogen bonding; thiocarbonyl groups; thiourea compounds
Year: 2015 PMID: 25844197 PMCID: PMC4350712 DOI: 10.1107/S2056989015003412
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, with 50% probability displacement ellipsoids. Hydrogen bonds are shown as dashed lines.
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| N2H1 | 0.82(2) | 1.94(2) | 2.644(2) | 144(2) |
| N1H1 | 0.81(2) | 2.74(2) | 3.511(2) | 158(2) |
| C10H10 | 0.93 | 2.57 | 3.221(2) | 127 |
Symmetry code: (i) .
Figure 2The crystal packing of the title compound viewed down the c axis. Hydrogen bonds are shown as dashed lines.
Experimental details
| Crystal data | |
| Chemical formula | C15H15N3OS |
|
| 285.36 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 294 |
|
| 11.5297(12), 6.1860(6), 20.657(2) |
| () | 101.431(2) |
|
| 1444.1(3) |
|
| 4 |
| Radiation type | Mo |
| (mm1) | 0.22 |
| Crystal size (mm) | 0.38 0.34 0.09 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.920, 0.981 |
| No. of measured, independent and observed [ | 15813, 4233, 2790 |
|
| 0.028 |
| (sin /)max (1) | 0.706 |
| Refinement | |
|
| 0.048, 0.164, 1.05 |
| No. of reflections | 4233 |
| No. of parameters | 191 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| max, min (e 3) | 0.27, 0.19 |
Computer programs: APEX2 and SAINT (Bruker, 2005 ▸), SHELXTL (Sheldrick, 2008 ▸) and PLATON (Spek, 2009 ▸).
| C15H15N3OS | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3960 reflections |
| θ = 2.4–25.9° | |
| µ = 0.22 mm−1 | |
| β = 101.431 (2)° | Plate, colourless |
| 0.38 × 0.34 × 0.09 mm | |
| Bruker APEXII CCD diffractometer | 4233 independent reflections |
| Radiation source: fine-focus sealed tube | 2790 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 30.1°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 15813 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4233 reflections | (Δ/σ)max < 0.001 |
| 191 parameters | Δρmax = 0.27 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.47752 (4) | 0.82687 (9) | 0.41107 (2) | 0.0655 (2) | |
| O1 | 0.10758 (10) | 1.0358 (2) | 0.43058 (7) | 0.0664 (4) | |
| N1 | 0.30931 (13) | 1.0520 (2) | 0.44717 (7) | 0.0489 (3) | |
| N2 | 0.24183 (13) | 0.7757 (3) | 0.37524 (7) | 0.0499 (3) | |
| N3 | 0.11827 (13) | 0.5315 (3) | 0.31789 (8) | 0.0656 (4) | |
| C1 | 0.11290 (16) | 1.3270 (3) | 0.53813 (9) | 0.0549 (4) | |
| H1A | 0.0514 | 1.2271 | 0.5317 | 0.066* | |
| C2 | 0.11387 (17) | 1.4947 (3) | 0.58230 (9) | 0.0618 (5) | |
| H2A | 0.0534 | 1.5049 | 0.6060 | 0.074* | |
| C3 | 0.20271 (18) | 1.6472 (3) | 0.59200 (9) | 0.0585 (5) | |
| C4 | 0.29222 (18) | 1.6283 (3) | 0.55643 (9) | 0.0595 (5) | |
| H4A | 0.3525 | 1.7306 | 0.5622 | 0.071* | |
| C5 | 0.29362 (16) | 1.4598 (3) | 0.51247 (8) | 0.0525 (4) | |
| H5A | 0.3547 | 1.4492 | 0.4892 | 0.063* | |
| C6 | 0.20408 (14) | 1.3073 (3) | 0.50317 (8) | 0.0463 (4) | |
| C7 | 0.20039 (14) | 1.1224 (3) | 0.45721 (8) | 0.0481 (4) | |
| C8 | 0.33584 (14) | 0.8813 (3) | 0.40921 (7) | 0.0456 (4) | |
| C9 | 0.23136 (14) | 0.5873 (3) | 0.33544 (7) | 0.0485 (4) | |
| C10 | 0.32251 (15) | 0.4763 (3) | 0.31581 (8) | 0.0546 (4) | |
| H10A | 0.4004 | 0.5224 | 0.3292 | 0.065* | |
| C11 | 0.29672 (18) | 0.2966 (3) | 0.27621 (8) | 0.0549 (4) | |
| C12 | 0.18012 (19) | 0.2358 (4) | 0.25798 (10) | 0.0673 (5) | |
| H12A | 0.1591 | 0.1146 | 0.2316 | 0.081* | |
| C13 | 0.0953 (2) | 0.3570 (4) | 0.27931 (12) | 0.0766 (6) | |
| H13A | 0.0167 | 0.3150 | 0.2661 | 0.092* | |
| C14 | 0.2033 (3) | 1.8322 (4) | 0.64013 (11) | 0.0836 (7) | |
| H14A | 0.2708 | 1.9228 | 0.6397 | 0.125* | |
| H14B | 0.2073 | 1.7754 | 0.6838 | 0.125* | |
| H14C | 0.1322 | 1.9156 | 0.6274 | 0.125* | |
| C15 | 0.3924 (2) | 0.1738 (4) | 0.25264 (13) | 0.0834 (7) | |
| H15A | 0.4636 | 0.1785 | 0.2858 | 0.125* | |
| H15B | 0.4068 | 0.2380 | 0.2126 | 0.125* | |
| H15C | 0.3682 | 0.0262 | 0.2443 | 0.125* | |
| H1N2 | 0.181 (2) | 0.810 (4) | 0.3871 (12) | 0.083 (7)* | |
| H1N1 | 0.3673 (18) | 1.100 (3) | 0.4720 (10) | 0.055 (5)* |
| S1 | 0.0427 (3) | 0.0886 (4) | 0.0651 (3) | −0.0032 (2) | 0.0107 (2) | −0.0266 (2) |
| O1 | 0.0437 (7) | 0.0727 (10) | 0.0793 (9) | 0.0008 (6) | 0.0035 (6) | −0.0220 (7) |
| N1 | 0.0440 (7) | 0.0525 (9) | 0.0488 (7) | −0.0028 (6) | 0.0057 (6) | −0.0086 (6) |
| N2 | 0.0429 (7) | 0.0548 (9) | 0.0498 (7) | 0.0016 (6) | 0.0040 (6) | −0.0088 (6) |
| N3 | 0.0508 (8) | 0.0691 (11) | 0.0723 (10) | −0.0025 (8) | 0.0012 (7) | −0.0189 (8) |
| C1 | 0.0478 (9) | 0.0604 (11) | 0.0555 (9) | 0.0019 (8) | 0.0083 (7) | −0.0018 (8) |
| C2 | 0.0624 (11) | 0.0725 (13) | 0.0510 (9) | 0.0149 (10) | 0.0124 (8) | −0.0027 (8) |
| C3 | 0.0731 (12) | 0.0516 (11) | 0.0464 (9) | 0.0149 (9) | 0.0011 (8) | 0.0002 (7) |
| C4 | 0.0701 (12) | 0.0457 (10) | 0.0602 (10) | −0.0014 (9) | 0.0066 (9) | 0.0008 (8) |
| C5 | 0.0597 (10) | 0.0466 (10) | 0.0520 (9) | 0.0011 (8) | 0.0127 (7) | 0.0038 (7) |
| C6 | 0.0475 (8) | 0.0447 (9) | 0.0452 (8) | 0.0044 (7) | 0.0053 (6) | 0.0016 (6) |
| C7 | 0.0454 (8) | 0.0494 (10) | 0.0480 (8) | 0.0005 (7) | 0.0054 (7) | −0.0004 (7) |
| C8 | 0.0457 (8) | 0.0501 (9) | 0.0401 (7) | −0.0016 (7) | 0.0064 (6) | −0.0001 (6) |
| C9 | 0.0495 (9) | 0.0526 (10) | 0.0407 (7) | −0.0004 (7) | 0.0029 (6) | −0.0006 (7) |
| C10 | 0.0548 (10) | 0.0566 (11) | 0.0534 (9) | −0.0008 (8) | 0.0131 (7) | −0.0033 (8) |
| C11 | 0.0730 (12) | 0.0469 (10) | 0.0460 (8) | 0.0014 (8) | 0.0148 (8) | 0.0007 (7) |
| C12 | 0.0770 (13) | 0.0601 (12) | 0.0648 (11) | −0.0072 (10) | 0.0138 (10) | −0.0136 (9) |
| C13 | 0.0624 (12) | 0.0760 (15) | 0.0862 (14) | −0.0093 (10) | 0.0022 (10) | −0.0282 (12) |
| C14 | 0.114 (2) | 0.0673 (15) | 0.0669 (13) | 0.0168 (12) | 0.0112 (13) | −0.0144 (10) |
| C15 | 0.0940 (17) | 0.0733 (16) | 0.0907 (16) | 0.0025 (12) | 0.0374 (14) | −0.0172 (12) |
| S1—C8 | 1.6609 (16) | C4—H4A | 0.9300 |
| O1—C7 | 1.225 (2) | C5—C6 | 1.384 (2) |
| N1—C7 | 1.383 (2) | C5—H5A | 0.9300 |
| N1—C8 | 1.385 (2) | C6—C7 | 1.482 (2) |
| N1—H1N1 | 0.81 (2) | C9—C10 | 1.382 (2) |
| N2—C8 | 1.339 (2) | C10—C11 | 1.377 (3) |
| N2—C9 | 1.417 (2) | C10—H10A | 0.9300 |
| N2—H1N2 | 0.82 (2) | C11—C12 | 1.375 (3) |
| N3—C9 | 1.328 (2) | C11—C15 | 1.498 (3) |
| N3—C13 | 1.337 (3) | C12—C13 | 1.373 (3) |
| C1—C2 | 1.380 (3) | C12—H12A | 0.9300 |
| C1—C6 | 1.394 (2) | C13—H13A | 0.9300 |
| C1—H1A | 0.9300 | C14—H14A | 0.9600 |
| C2—C3 | 1.378 (3) | C14—H14B | 0.9600 |
| C2—H2A | 0.9300 | C14—H14C | 0.9600 |
| C3—C4 | 1.385 (3) | C15—H15A | 0.9600 |
| C3—C14 | 1.515 (3) | C15—H15B | 0.9600 |
| C4—C5 | 1.385 (3) | C15—H15C | 0.9600 |
| C7—N1—C8 | 129.34 (15) | N2—C8—S1 | 127.11 (13) |
| C7—N1—H1N1 | 116.6 (14) | N1—C8—S1 | 117.91 (12) |
| C8—N1—H1N1 | 112.9 (14) | N3—C9—C10 | 123.61 (16) |
| C8—N2—C9 | 132.25 (15) | N3—C9—N2 | 109.77 (15) |
| C8—N2—H1N2 | 111.7 (17) | C10—C9—N2 | 126.61 (15) |
| C9—N2—H1N2 | 114.2 (17) | C11—C10—C9 | 119.22 (17) |
| C9—N3—C13 | 116.14 (17) | C11—C10—H10A | 120.4 |
| C2—C1—C6 | 120.01 (18) | C9—C10—H10A | 120.4 |
| C2—C1—H1A | 120.0 | C12—C11—C10 | 117.90 (18) |
| C6—C1—H1A | 120.0 | C12—C11—C15 | 121.03 (18) |
| C3—C2—C1 | 121.29 (17) | C10—C11—C15 | 121.07 (19) |
| C3—C2—H2A | 119.4 | C13—C12—C11 | 118.87 (19) |
| C1—C2—H2A | 119.4 | C13—C12—H12A | 120.6 |
| C2—C3—C4 | 118.38 (17) | C11—C12—H12A | 120.6 |
| C2—C3—C14 | 121.3 (2) | N3—C13—C12 | 124.3 (2) |
| C4—C3—C14 | 120.3 (2) | N3—C13—H13A | 117.9 |
| C5—C4—C3 | 121.21 (18) | C12—C13—H13A | 117.9 |
| C5—C4—H4A | 119.4 | C3—C14—H14A | 109.5 |
| C3—C4—H4A | 119.4 | C3—C14—H14B | 109.5 |
| C6—C5—C4 | 119.94 (17) | H14A—C14—H14B | 109.5 |
| C6—C5—H5A | 120.0 | C3—C14—H14C | 109.5 |
| C4—C5—H5A | 120.0 | H14A—C14—H14C | 109.5 |
| C5—C6—C1 | 119.15 (16) | H14B—C14—H14C | 109.5 |
| C5—C6—C7 | 122.77 (15) | C11—C15—H15A | 109.5 |
| C1—C6—C7 | 118.08 (15) | C11—C15—H15B | 109.5 |
| O1—C7—N1 | 122.22 (16) | H15A—C15—H15B | 109.5 |
| O1—C7—C6 | 122.46 (15) | C11—C15—H15C | 109.5 |
| N1—C7—C6 | 115.31 (15) | H15A—C15—H15C | 109.5 |
| N2—C8—N1 | 114.97 (14) | H15B—C15—H15C | 109.5 |
| C6—C1—C2—C3 | 1.2 (3) | C9—N2—C8—N1 | −174.80 (16) |
| C1—C2—C3—C4 | −0.3 (3) | C9—N2—C8—S1 | 4.2 (3) |
| C1—C2—C3—C14 | 179.57 (18) | C7—N1—C8—N2 | 3.2 (3) |
| C2—C3—C4—C5 | −0.5 (3) | C7—N1—C8—S1 | −175.97 (14) |
| C14—C3—C4—C5 | 179.64 (17) | C13—N3—C9—C10 | 0.3 (3) |
| C3—C4—C5—C6 | 0.4 (3) | C13—N3—C9—N2 | 179.18 (18) |
| C4—C5—C6—C1 | 0.5 (3) | C8—N2—C9—N3 | 173.13 (18) |
| C4—C5—C6—C7 | −179.68 (16) | C8—N2—C9—C10 | −8.0 (3) |
| C2—C1—C6—C5 | −1.2 (3) | N3—C9—C10—C11 | −0.4 (3) |
| C2—C1—C6—C7 | 178.91 (16) | N2—C9—C10—C11 | −179.18 (16) |
| C8—N1—C7—O1 | −1.1 (3) | C9—C10—C11—C12 | 0.0 (3) |
| C8—N1—C7—C6 | 177.94 (15) | C9—C10—C11—C15 | 178.80 (19) |
| C5—C6—C7—O1 | −152.85 (18) | C10—C11—C12—C13 | 0.7 (3) |
| C1—C6—C7—O1 | 27.0 (2) | C15—C11—C12—C13 | −178.2 (2) |
| C5—C6—C7—N1 | 28.1 (2) | C9—N3—C13—C12 | 0.4 (4) |
| C1—C6—C7—N1 | −152.03 (16) | C11—C12—C13—N3 | −0.9 (4) |
| H··· | ||||
| N2—H1 | 0.82 (2) | 1.94 (2) | 2.644 (2) | 144 (2) |
| N1—H1 | 0.81 (2) | 2.74 (2) | 3.5106 (15) | 157.8 (18) |
| C10—H10 | 0.93 | 2.57 | 3.2211 (19) | 127 |