| Literature DB >> 25995946 |
Nadiah Ameram1, Farook Adam1, Nur Nadia Fatihah1, Salih Al-Juaid2.
Abstract
In the title compound, C15H15N3OS, there is an intra-molecular N-H⋯O hydrogen bond and an intra-molecular C-H⋯S hydrogen bond involving the C=O and C=S bonds which lie on opposite sides of the mol-ecule. The mol-ecule is non-planar with the benzene and pyridine rings being inclined to one another by 26.86 (9)°. In the crystal, mol-ecules are linked by pairs of N-H⋯S hydrogen bonds, forming inversion dimers with an R 2 (2)(8) ring motif. The dimers are linked via C-H⋯S hydrogen bonds, forming slabs parallel to the bc plane.Entities:
Keywords: benzamide group; carbonyl thiourea; crystal structure; ortho position
Year: 2015 PMID: 25995946 PMCID: PMC4420090 DOI: 10.1107/S2056989015007860
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C15H15N3OS | |
| Monoclinic, | Mo |
| Cell parameters from 5643 reflections | |
| θ = 2.9–30.0° | |
| µ = 0.23 mm−1 | |
| β = 95.312 (2)° | |
| Block, colourless | |
| 0.54 × 0.28 × 0.18 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 3780 independent reflections |
| Radiation source: fine-focus sealed tube | 3112 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 29.0°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 15037 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3780 reflections | Δρmax = 0.32 e Å−3 |
| 191 parameters | Δρmin = −0.23 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| S1 | 0.47895 (3) | 0.33500 (6) | −0.09032 (2) | 0.01997 (10) | |
| O1 | 0.13144 (8) | 0.65482 (17) | −0.07451 (5) | 0.0234 (2) | |
| N1 | 0.32328 (9) | 0.59313 (19) | −0.04676 (5) | 0.0176 (2) | |
| N2 | 0.25172 (9) | 0.3533 (2) | −0.12933 (6) | 0.0193 (2) | |
| N3 | 0.12736 (10) | 0.1758 (2) | −0.20438 (6) | 0.0239 (3) | |
| C1 | 0.13792 (11) | 0.8962 (2) | 0.05748 (6) | 0.0195 (3) | |
| C2 | 0.14708 (12) | 1.0676 (2) | 0.10348 (7) | 0.0233 (3) | |
| H2A | 0.0875 | 1.0906 | 0.1325 | 0.028* | |
| C3 | 0.24044 (13) | 1.2056 (2) | 0.10816 (7) | 0.0260 (3) | |
| H3A | 0.2440 | 1.3210 | 0.1400 | 0.031* | |
| C4 | 0.32857 (13) | 1.1749 (2) | 0.06622 (7) | 0.0248 (3) | |
| H4A | 0.3930 | 1.2679 | 0.0695 | 0.030* | |
| C5 | 0.32134 (11) | 1.0070 (2) | 0.01962 (7) | 0.0216 (3) | |
| H5A | 0.3811 | 0.9859 | −0.0094 | 0.026* | |
| C6 | 0.22749 (11) | 0.8685 (2) | 0.01472 (6) | 0.0179 (3) | |
| C7 | 0.22010 (11) | 0.6972 (2) | −0.03910 (6) | 0.0179 (3) | |
| C8 | 0.34405 (10) | 0.4251 (2) | −0.09059 (6) | 0.0171 (3) | |
| C9 | 0.23574 (11) | 0.1778 (2) | −0.17521 (6) | 0.0190 (3) | |
| C10 | 0.31741 (11) | 0.0251 (2) | −0.18797 (7) | 0.0205 (3) | |
| H10A | 0.3934 | 0.0348 | −0.1665 | 0.025* | |
| C11 | 0.28585 (12) | −0.1427 (2) | −0.23287 (7) | 0.0218 (3) | |
| C12 | 0.17278 (13) | −0.1482 (3) | −0.26237 (7) | 0.0266 (3) | |
| H12A | 0.1474 | −0.2611 | −0.2926 | 0.032* | |
| C13 | 0.09824 (12) | 0.0126 (3) | −0.24707 (7) | 0.0290 (3) | |
| H13A | 0.0218 | 0.0073 | −0.2680 | 0.035* | |
| C14 | 0.03709 (12) | 0.7467 (3) | 0.05661 (7) | 0.0247 (3) | |
| H14A | −0.0059 | 0.7766 | 0.0962 | 0.037* | |
| H14B | 0.0644 | 0.5983 | 0.0589 | 0.037* | |
| H14C | −0.0129 | 0.7678 | 0.0141 | 0.037* | |
| C15 | 0.37213 (13) | −0.3085 (3) | −0.24966 (8) | 0.0282 (3) | |
| H15A | 0.4294 | −0.3266 | −0.2103 | 0.042* | |
| H15B | 0.4101 | −0.2618 | −0.2897 | 0.042* | |
| H15C | 0.3331 | −0.4452 | −0.2599 | 0.042* | |
| H1N1 | 0.3827 (15) | 0.625 (3) | −0.0167 (9) | 0.035 (5)* | |
| H1N2 | 0.1874 (14) | 0.430 (3) | −0.1245 (8) | 0.029 (4)* |
| S1 | 0.01482 (15) | 0.0247 (2) | 0.02041 (15) | −0.00071 (13) | 0.00180 (11) | −0.00555 (13) |
| O1 | 0.0187 (4) | 0.0267 (6) | 0.0242 (5) | 0.0014 (4) | −0.0009 (4) | −0.0061 (4) |
| N1 | 0.0162 (5) | 0.0173 (6) | 0.0190 (5) | −0.0010 (4) | 0.0000 (4) | −0.0034 (4) |
| N2 | 0.0157 (5) | 0.0211 (6) | 0.0209 (5) | 0.0004 (5) | 0.0007 (4) | −0.0050 (5) |
| N3 | 0.0199 (5) | 0.0290 (7) | 0.0225 (5) | −0.0020 (5) | 0.0001 (4) | −0.0070 (5) |
| C1 | 0.0210 (6) | 0.0193 (7) | 0.0178 (6) | 0.0018 (5) | −0.0001 (5) | 0.0028 (5) |
| C2 | 0.0296 (7) | 0.0214 (7) | 0.0190 (6) | 0.0051 (6) | 0.0034 (5) | 0.0002 (6) |
| C3 | 0.0394 (8) | 0.0160 (7) | 0.0220 (6) | 0.0017 (6) | −0.0008 (6) | −0.0020 (5) |
| C4 | 0.0304 (7) | 0.0160 (7) | 0.0275 (7) | −0.0041 (6) | 0.0002 (5) | 0.0007 (6) |
| C5 | 0.0246 (6) | 0.0163 (7) | 0.0243 (6) | −0.0007 (5) | 0.0034 (5) | 0.0012 (5) |
| C6 | 0.0204 (6) | 0.0148 (6) | 0.0184 (5) | 0.0014 (5) | 0.0004 (4) | 0.0015 (5) |
| C7 | 0.0189 (6) | 0.0161 (7) | 0.0189 (5) | −0.0004 (5) | 0.0035 (4) | 0.0016 (5) |
| C8 | 0.0179 (6) | 0.0173 (7) | 0.0165 (5) | −0.0017 (5) | 0.0026 (4) | −0.0001 (5) |
| C9 | 0.0199 (6) | 0.0200 (7) | 0.0173 (5) | −0.0045 (5) | 0.0026 (4) | −0.0027 (5) |
| C10 | 0.0205 (6) | 0.0203 (7) | 0.0209 (6) | −0.0010 (5) | 0.0027 (5) | −0.0024 (5) |
| C11 | 0.0292 (7) | 0.0200 (7) | 0.0172 (6) | −0.0037 (6) | 0.0072 (5) | 0.0002 (5) |
| C12 | 0.0325 (7) | 0.0265 (8) | 0.0211 (6) | −0.0078 (6) | 0.0036 (5) | −0.0077 (6) |
| C13 | 0.0242 (7) | 0.0363 (9) | 0.0259 (7) | −0.0075 (7) | −0.0008 (5) | −0.0098 (7) |
| C14 | 0.0231 (6) | 0.0287 (8) | 0.0229 (6) | −0.0014 (6) | 0.0051 (5) | −0.0014 (6) |
| C15 | 0.0384 (8) | 0.0214 (8) | 0.0261 (7) | 0.0016 (6) | 0.0090 (6) | −0.0033 (6) |
| S1—C8 | 1.6768 (13) | C4—H4A | 0.9500 |
| O1—C7 | 1.2223 (15) | C5—C6 | 1.3949 (19) |
| N1—C8 | 1.3898 (17) | C5—H5A | 0.9500 |
| N1—C7 | 1.3924 (16) | C6—C7 | 1.4964 (18) |
| N1—H1N1 | 0.891 (18) | C9—C10 | 1.3895 (19) |
| N2—C8 | 1.3386 (16) | C10—C11 | 1.3940 (19) |
| N2—C9 | 1.4166 (17) | C10—H10A | 0.9500 |
| N2—H1N2 | 0.903 (17) | C11—C12 | 1.3949 (19) |
| N3—C13 | 1.3406 (19) | C11—C15 | 1.504 (2) |
| N3—C9 | 1.3426 (16) | C12—C13 | 1.381 (2) |
| C1—C2 | 1.395 (2) | C12—H12A | 0.9500 |
| C1—C6 | 1.4110 (18) | C13—H13A | 0.9500 |
| C1—C14 | 1.5041 (19) | C14—H14A | 0.9800 |
| C2—C3 | 1.389 (2) | C14—H14B | 0.9800 |
| C2—H2A | 0.9500 | C14—H14C | 0.9800 |
| C3—C4 | 1.389 (2) | C15—H15A | 0.9800 |
| C3—H3A | 0.9500 | C15—H15B | 0.9800 |
| C4—C5 | 1.386 (2) | C15—H15C | 0.9800 |
| C8—N1—C7 | 128.43 (11) | N2—C8—S1 | 126.96 (11) |
| C8—N1—H1N1 | 113.8 (12) | N1—C8—S1 | 118.02 (9) |
| C7—N1—H1N1 | 117.3 (12) | N3—C9—C10 | 123.84 (12) |
| C8—N2—C9 | 132.00 (12) | N3—C9—N2 | 109.89 (12) |
| C8—N2—H1N2 | 113.7 (11) | C10—C9—N2 | 126.25 (12) |
| C9—N2—H1N2 | 114.3 (11) | C9—C10—C11 | 118.80 (12) |
| C13—N3—C9 | 116.57 (13) | C9—C10—H10A | 120.6 |
| C2—C1—C6 | 117.29 (13) | C11—C10—H10A | 120.6 |
| C2—C1—C14 | 119.77 (12) | C10—C11—C12 | 117.68 (13) |
| C6—C1—C14 | 122.91 (12) | C10—C11—C15 | 120.66 (13) |
| C3—C2—C1 | 122.11 (13) | C12—C11—C15 | 121.65 (13) |
| C3—C2—H2A | 118.9 | C13—C12—C11 | 119.21 (13) |
| C1—C2—H2A | 118.9 | C13—C12—H12A | 120.4 |
| C2—C3—C4 | 119.94 (13) | C11—C12—H12A | 120.4 |
| C2—C3—H3A | 120.0 | N3—C13—C12 | 123.87 (13) |
| C4—C3—H3A | 120.0 | N3—C13—H13A | 118.1 |
| C5—C4—C3 | 119.22 (13) | C12—C13—H13A | 118.1 |
| C5—C4—H4A | 120.4 | C1—C14—H14A | 109.5 |
| C3—C4—H4A | 120.4 | C1—C14—H14B | 109.5 |
| C4—C5—C6 | 120.92 (13) | H14A—C14—H14B | 109.5 |
| C4—C5—H5A | 119.5 | C1—C14—H14C | 109.5 |
| C6—C5—H5A | 119.5 | H14A—C14—H14C | 109.5 |
| C5—C6—C1 | 120.51 (12) | H14B—C14—H14C | 109.5 |
| C5—C6—C7 | 119.01 (12) | C11—C15—H15A | 109.5 |
| C1—C6—C7 | 120.39 (12) | C11—C15—H15B | 109.5 |
| O1—C7—N1 | 122.59 (12) | H15A—C15—H15B | 109.5 |
| O1—C7—C6 | 122.90 (12) | C11—C15—H15C | 109.5 |
| N1—C7—C6 | 114.49 (11) | H15A—C15—H15C | 109.5 |
| N2—C8—N1 | 115.02 (11) | H15B—C15—H15C | 109.5 |
| C6—C1—C2—C3 | −0.6 (2) | C9—N2—C8—N1 | −174.26 (13) |
| C14—C1—C2—C3 | 177.60 (13) | C9—N2—C8—S1 | 6.2 (2) |
| C1—C2—C3—C4 | −0.1 (2) | C7—N1—C8—N2 | −1.2 (2) |
| C2—C3—C4—C5 | 0.6 (2) | C7—N1—C8—S1 | 178.38 (11) |
| C3—C4—C5—C6 | −0.4 (2) | C13—N3—C9—C10 | 1.3 (2) |
| C4—C5—C6—C1 | −0.3 (2) | C13—N3—C9—N2 | −177.29 (12) |
| C4—C5—C6—C7 | 176.50 (12) | C8—N2—C9—N3 | −177.61 (14) |
| C2—C1—C6—C5 | 0.77 (19) | C8—N2—C9—C10 | 3.9 (2) |
| C14—C1—C6—C5 | −177.37 (12) | N3—C9—C10—C11 | −0.9 (2) |
| C2—C1—C6—C7 | −175.96 (12) | N2—C9—C10—C11 | 177.46 (13) |
| C14—C1—C6—C7 | 5.90 (19) | C9—C10—C11—C12 | −0.4 (2) |
| C8—N1—C7—O1 | −3.2 (2) | C9—C10—C11—C15 | 178.39 (13) |
| C8—N1—C7—C6 | 178.21 (12) | C10—C11—C12—C13 | 1.1 (2) |
| C5—C6—C7—O1 | −136.49 (14) | C15—C11—C12—C13 | −177.63 (14) |
| C1—C6—C7—O1 | 40.29 (19) | C9—N3—C13—C12 | −0.5 (2) |
| C5—C6—C7—N1 | 42.05 (17) | C11—C12—C13—N3 | −0.7 (2) |
| C1—C6—C7—N1 | −141.17 (12) |
| H··· | ||||
| N2—H1 | 0.905 (17) | 1.863 (18) | 2.6370 (16) | 142.2 (15) |
| C10—H10 | 0.95 | 2.54 | 3.2084 (14) | 127 |
| N1—H1 | 0.891 (18) | 2.536 (18) | 3.4046 (11) | 165.1 (16) |
| C15—H15 | 0.98 | 2.85 | 3.8248 (16) | 175 |
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| N2H1 | 0.905(17) | 1.863(18) | 2.6370(16) | 142.2(15) |
| C10H10 | 0.95 | 2.54 | 3.2084(14) | 127 |
| N1H1 | 0.891(18) | 2.536(18) | 3.4046(11) | 165.1(16) |
| C15H15 | 0.98 | 2.85 | 3.8248(16) | 175 |
Symmetry codes: (i) ; (ii) .