Literature DB >> 25995946

Crystal structure of 2-methyl-N-[(4-methyl-pyridin-2-yl)carbamo-thio-yl]benzamide.

Nadiah Ameram1, Farook Adam1, Nur Nadia Fatihah1, Salih Al-Juaid2.   

Abstract

In the title compound, C15H15N3OS, there is an intra-molecular N-H⋯O hydrogen bond and an intra-molecular C-H⋯S hydrogen bond involving the C=O and C=S bonds which lie on opposite sides of the mol-ecule. The mol-ecule is non-planar with the benzene and pyridine rings being inclined to one another by 26.86 (9)°. In the crystal, mol-ecules are linked by pairs of N-H⋯S hydrogen bonds, forming inversion dimers with an R 2 (2)(8) ring motif. The dimers are linked via C-H⋯S hydrogen bonds, forming slabs parallel to the bc plane.

Entities:  

Keywords:  benzamide group; carbonyl thio­urea; crystal structure; ortho position

Year:  2015        PMID: 25995946      PMCID: PMC4420090          DOI: 10.1107/S2056989015007860

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the crystal structures of related compounds, see: Adam et al. (2014 ▸, 2015 ▸).

Experimental

Crystal data

C15H15N3OS M = 285.36 Monoclinic, a = 11.7131 (3) Å b = 6.2423 (2) Å c = 19.5376 (5) Å β = 95.312 (2)° V = 1422.39 (7) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 100 K 0.54 × 0.28 × 0.18 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.865, T max = 0.960 15037 measured reflections 3780 independent reflections 3112 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.093 S = 1.05 3780 reflections 191 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.23 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXL2014 and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015007860/su5119sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015007860/su5119Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015007860/su5119Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015007860/su5119fig1.tif A view of the mol­ecular structure of the title compound, showing the atom labellling. Displacement ellipsoids are drawn at the 50% probability level. Click here for additional data file. b . DOI: 10.1107/S2056989015007860/su5119fig2.tif A view along the b axis of the crystal packing of the title compound. Hydrogen bonds are shown as dashed lines (see Table 1 for details). CCDC reference: 974439 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H15N3OSF(000) = 600
Mr = 285.36Dx = 1.333 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 11.7131 (3) ÅCell parameters from 5643 reflections
b = 6.2423 (2) Åθ = 2.9–30.0°
c = 19.5376 (5) ŵ = 0.23 mm1
β = 95.312 (2)°T = 100 K
V = 1422.39 (7) Å3Block, colourless
Z = 40.54 × 0.28 × 0.18 mm
Bruker SMART APEXII CCD area-detector diffractometer3780 independent reflections
Radiation source: fine-focus sealed tube3112 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
φ and ω scansθmax = 29.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −15→15
Tmin = 0.865, Tmax = 0.960k = −8→8
15037 measured reflectionsl = −26→26
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.093w = 1/[σ2(Fo2) + (0.0369P)2 + 0.6623P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
3780 reflectionsΔρmax = 0.32 e Å3
191 parametersΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S10.47895 (3)0.33500 (6)−0.09032 (2)0.01997 (10)
O10.13144 (8)0.65482 (17)−0.07451 (5)0.0234 (2)
N10.32328 (9)0.59313 (19)−0.04676 (5)0.0176 (2)
N20.25172 (9)0.3533 (2)−0.12933 (6)0.0193 (2)
N30.12736 (10)0.1758 (2)−0.20438 (6)0.0239 (3)
C10.13792 (11)0.8962 (2)0.05748 (6)0.0195 (3)
C20.14708 (12)1.0676 (2)0.10348 (7)0.0233 (3)
H2A0.08751.09060.13250.028*
C30.24044 (13)1.2056 (2)0.10816 (7)0.0260 (3)
H3A0.24401.32100.14000.031*
C40.32857 (13)1.1749 (2)0.06622 (7)0.0248 (3)
H4A0.39301.26790.06950.030*
C50.32134 (11)1.0070 (2)0.01962 (7)0.0216 (3)
H5A0.38110.9859−0.00940.026*
C60.22749 (11)0.8685 (2)0.01472 (6)0.0179 (3)
C70.22010 (11)0.6972 (2)−0.03910 (6)0.0179 (3)
C80.34405 (10)0.4251 (2)−0.09059 (6)0.0171 (3)
C90.23574 (11)0.1778 (2)−0.17521 (6)0.0190 (3)
C100.31741 (11)0.0251 (2)−0.18797 (7)0.0205 (3)
H10A0.39340.0348−0.16650.025*
C110.28585 (12)−0.1427 (2)−0.23287 (7)0.0218 (3)
C120.17278 (13)−0.1482 (3)−0.26237 (7)0.0266 (3)
H12A0.1474−0.2611−0.29260.032*
C130.09824 (12)0.0126 (3)−0.24707 (7)0.0290 (3)
H13A0.02180.0073−0.26800.035*
C140.03709 (12)0.7467 (3)0.05661 (7)0.0247 (3)
H14A−0.00590.77660.09620.037*
H14B0.06440.59830.05890.037*
H14C−0.01290.76780.01410.037*
C150.37213 (13)−0.3085 (3)−0.24966 (8)0.0282 (3)
H15A0.4294−0.3266−0.21030.042*
H15B0.4101−0.2618−0.28970.042*
H15C0.3331−0.4452−0.25990.042*
H1N10.3827 (15)0.625 (3)−0.0167 (9)0.035 (5)*
H1N20.1874 (14)0.430 (3)−0.1245 (8)0.029 (4)*
U11U22U33U12U13U23
S10.01482 (15)0.0247 (2)0.02041 (15)−0.00071 (13)0.00180 (11)−0.00555 (13)
O10.0187 (4)0.0267 (6)0.0242 (5)0.0014 (4)−0.0009 (4)−0.0061 (4)
N10.0162 (5)0.0173 (6)0.0190 (5)−0.0010 (4)0.0000 (4)−0.0034 (4)
N20.0157 (5)0.0211 (6)0.0209 (5)0.0004 (5)0.0007 (4)−0.0050 (5)
N30.0199 (5)0.0290 (7)0.0225 (5)−0.0020 (5)0.0001 (4)−0.0070 (5)
C10.0210 (6)0.0193 (7)0.0178 (6)0.0018 (5)−0.0001 (5)0.0028 (5)
C20.0296 (7)0.0214 (7)0.0190 (6)0.0051 (6)0.0034 (5)0.0002 (6)
C30.0394 (8)0.0160 (7)0.0220 (6)0.0017 (6)−0.0008 (6)−0.0020 (5)
C40.0304 (7)0.0160 (7)0.0275 (7)−0.0041 (6)0.0002 (5)0.0007 (6)
C50.0246 (6)0.0163 (7)0.0243 (6)−0.0007 (5)0.0034 (5)0.0012 (5)
C60.0204 (6)0.0148 (6)0.0184 (5)0.0014 (5)0.0004 (4)0.0015 (5)
C70.0189 (6)0.0161 (7)0.0189 (5)−0.0004 (5)0.0035 (4)0.0016 (5)
C80.0179 (6)0.0173 (7)0.0165 (5)−0.0017 (5)0.0026 (4)−0.0001 (5)
C90.0199 (6)0.0200 (7)0.0173 (5)−0.0045 (5)0.0026 (4)−0.0027 (5)
C100.0205 (6)0.0203 (7)0.0209 (6)−0.0010 (5)0.0027 (5)−0.0024 (5)
C110.0292 (7)0.0200 (7)0.0172 (6)−0.0037 (6)0.0072 (5)0.0002 (5)
C120.0325 (7)0.0265 (8)0.0211 (6)−0.0078 (6)0.0036 (5)−0.0077 (6)
C130.0242 (7)0.0363 (9)0.0259 (7)−0.0075 (7)−0.0008 (5)−0.0098 (7)
C140.0231 (6)0.0287 (8)0.0229 (6)−0.0014 (6)0.0051 (5)−0.0014 (6)
C150.0384 (8)0.0214 (8)0.0261 (7)0.0016 (6)0.0090 (6)−0.0033 (6)
S1—C81.6768 (13)C4—H4A0.9500
O1—C71.2223 (15)C5—C61.3949 (19)
N1—C81.3898 (17)C5—H5A0.9500
N1—C71.3924 (16)C6—C71.4964 (18)
N1—H1N10.891 (18)C9—C101.3895 (19)
N2—C81.3386 (16)C10—C111.3940 (19)
N2—C91.4166 (17)C10—H10A0.9500
N2—H1N20.903 (17)C11—C121.3949 (19)
N3—C131.3406 (19)C11—C151.504 (2)
N3—C91.3426 (16)C12—C131.381 (2)
C1—C21.395 (2)C12—H12A0.9500
C1—C61.4110 (18)C13—H13A0.9500
C1—C141.5041 (19)C14—H14A0.9800
C2—C31.389 (2)C14—H14B0.9800
C2—H2A0.9500C14—H14C0.9800
C3—C41.389 (2)C15—H15A0.9800
C3—H3A0.9500C15—H15B0.9800
C4—C51.386 (2)C15—H15C0.9800
C8—N1—C7128.43 (11)N2—C8—S1126.96 (11)
C8—N1—H1N1113.8 (12)N1—C8—S1118.02 (9)
C7—N1—H1N1117.3 (12)N3—C9—C10123.84 (12)
C8—N2—C9132.00 (12)N3—C9—N2109.89 (12)
C8—N2—H1N2113.7 (11)C10—C9—N2126.25 (12)
C9—N2—H1N2114.3 (11)C9—C10—C11118.80 (12)
C13—N3—C9116.57 (13)C9—C10—H10A120.6
C2—C1—C6117.29 (13)C11—C10—H10A120.6
C2—C1—C14119.77 (12)C10—C11—C12117.68 (13)
C6—C1—C14122.91 (12)C10—C11—C15120.66 (13)
C3—C2—C1122.11 (13)C12—C11—C15121.65 (13)
C3—C2—H2A118.9C13—C12—C11119.21 (13)
C1—C2—H2A118.9C13—C12—H12A120.4
C2—C3—C4119.94 (13)C11—C12—H12A120.4
C2—C3—H3A120.0N3—C13—C12123.87 (13)
C4—C3—H3A120.0N3—C13—H13A118.1
C5—C4—C3119.22 (13)C12—C13—H13A118.1
C5—C4—H4A120.4C1—C14—H14A109.5
C3—C4—H4A120.4C1—C14—H14B109.5
C4—C5—C6120.92 (13)H14A—C14—H14B109.5
C4—C5—H5A119.5C1—C14—H14C109.5
C6—C5—H5A119.5H14A—C14—H14C109.5
C5—C6—C1120.51 (12)H14B—C14—H14C109.5
C5—C6—C7119.01 (12)C11—C15—H15A109.5
C1—C6—C7120.39 (12)C11—C15—H15B109.5
O1—C7—N1122.59 (12)H15A—C15—H15B109.5
O1—C7—C6122.90 (12)C11—C15—H15C109.5
N1—C7—C6114.49 (11)H15A—C15—H15C109.5
N2—C8—N1115.02 (11)H15B—C15—H15C109.5
C6—C1—C2—C3−0.6 (2)C9—N2—C8—N1−174.26 (13)
C14—C1—C2—C3177.60 (13)C9—N2—C8—S16.2 (2)
C1—C2—C3—C4−0.1 (2)C7—N1—C8—N2−1.2 (2)
C2—C3—C4—C50.6 (2)C7—N1—C8—S1178.38 (11)
C3—C4—C5—C6−0.4 (2)C13—N3—C9—C101.3 (2)
C4—C5—C6—C1−0.3 (2)C13—N3—C9—N2−177.29 (12)
C4—C5—C6—C7176.50 (12)C8—N2—C9—N3−177.61 (14)
C2—C1—C6—C50.77 (19)C8—N2—C9—C103.9 (2)
C14—C1—C6—C5−177.37 (12)N3—C9—C10—C11−0.9 (2)
C2—C1—C6—C7−175.96 (12)N2—C9—C10—C11177.46 (13)
C14—C1—C6—C75.90 (19)C9—C10—C11—C12−0.4 (2)
C8—N1—C7—O1−3.2 (2)C9—C10—C11—C15178.39 (13)
C8—N1—C7—C6178.21 (12)C10—C11—C12—C131.1 (2)
C5—C6—C7—O1−136.49 (14)C15—C11—C12—C13−177.63 (14)
C1—C6—C7—O140.29 (19)C9—N3—C13—C12−0.5 (2)
C5—C6—C7—N142.05 (17)C11—C12—C13—N3−0.7 (2)
C1—C6—C7—N1−141.17 (12)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O10.905 (17)1.863 (18)2.6370 (16)142.2 (15)
C10—H10A···S10.952.543.2084 (14)127
N1—H1N1···S1i0.891 (18)2.536 (18)3.4046 (11)165.1 (16)
C15—H15B···S1ii0.982.853.8248 (16)175
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N2H1N2O10.905(17)1.863(18)2.6370(16)142.2(15)
C10H10AS10.952.543.2084(14)127
N1H1N1S1i 0.891(18)2.536(18)3.4046(11)165.1(16)
C15H15BS1ii 0.982.853.8248(16)175

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

4.  4-Methyl-N-[2-(pyridin-2-yl)ethyl-carbamo-thio-yl]benzamide.

Authors:  Farook Adam; Nadiah Ameram; Naser Eltaher Eltayeb
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-07-31
  4 in total

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