Literature DB >> 25190797

How the ribosome hands the A-site tRNA to the P site during EF-G-catalyzed translocation.

Jie Zhou1, Laura Lancaster1, John Paul Donohue1, Harry F Noller2.   

Abstract

Coupled translocation of messenger RNA and transfer RNA (tRNA) through the ribosome, a process catalyzed by elongation factor EF-G, is a crucial step in protein synthesis. The crystal structure of a bacterial translocation complex describes the binding states of two tRNAs trapped in mid-translocation. The deacylated P-site tRNA has moved into a partly translocated pe/E chimeric hybrid state. The anticodon stem-loop of the A-site tRNA is captured in transition toward the 30S P site, while its 3' acceptor end contacts both the A and P loops of the 50S subunit, forming an ap/ap chimeric hybrid state. The structure shows how features of ribosomal RNA rearrange to hand off the A-site tRNA to the P site, revealing an active role for ribosomal RNA in the translocation process.
Copyright © 2014, American Association for the Advancement of Science.

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Year:  2014        PMID: 25190797      PMCID: PMC4242719          DOI: 10.1126/science.1255030

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  28 in total

1.  Recognition of cognate transfer RNA by the 30S ribosomal subunit.

Authors:  J M Ogle; D E Brodersen; W M Clemons ; M J Tarry; A P Carter; V Ramakrishnan
Journal:  Science       Date:  2001-05-04       Impact factor: 47.728

2.  Locking and unlocking of ribosomal motions.

Authors:  Mikel Valle; Andrey Zavialov; Jayati Sengupta; Urmila Rawat; Måns Ehrenberg; Joachim Frank
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

3.  Intermediate states in the movement of transfer RNA in the ribosome.

Authors:  D Moazed; H F Noller
Journal:  Nature       Date:  1989-11-09       Impact factor: 49.962

4.  mRNA helicase activity of the ribosome.

Authors:  Seyedtaghi Takyar; Robyn P Hickerson; Harry F Noller
Journal:  Cell       Date:  2005-01-14       Impact factor: 41.582

5.  Structures of the bacterial ribosome at 3.5 A resolution.

Authors:  Barbara S Schuwirth; Maria A Borovinskaya; Cathy W Hau; Wen Zhang; Antón Vila-Sanjurjo; James M Holton; Jamie H Doudna Cate
Journal:  Science       Date:  2005-11-04       Impact factor: 47.728

6.  Base-pairing between 23S rRNA and tRNA in the ribosomal A site.

Authors:  D F Kim; R Green
Journal:  Mol Cell       Date:  1999-11       Impact factor: 17.970

7.  A base pair between tRNA and 23S rRNA in the peptidyl transferase centre of the ribosome.

Authors:  R R Samaha; R Green; H F Noller
Journal:  Nature       Date:  1995-09-28       Impact factor: 49.962

8.  Hydrolysis of GTP by elongation factor G drives tRNA movement on the ribosome.

Authors:  M V Rodnina; A Savelsbergh; V I Katunin; W Wintermeyer
Journal:  Nature       Date:  1997-01-02       Impact factor: 49.962

9.  Visualization of two transfer RNAs trapped in transit during elongation factor G-mediated translocation.

Authors:  David J F Ramrath; Laura Lancaster; Thiemo Sprink; Thorsten Mielke; Justus Loerke; Harry F Noller; Christian M T Spahn
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

10.  Structural insights into peptide bond formation.

Authors:  Jeffrey L Hansen; T Martin Schmeing; Peter B Moore; Thomas A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-16       Impact factor: 11.205

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  89 in total

1.  EF4 disengages the peptidyl-tRNA CCA end and facilitates back-translocation on the 70S ribosome.

Authors:  Dejiu Zhang; Kaige Yan; Guangqiao Liu; Guangtao Song; Jiejian Luo; Yi Shi; Erchao Cheng; Shan Wu; Taijiao Jiang; Jizhong Lou; Ning Gao; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2016-01-25       Impact factor: 15.369

2.  Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.

Authors:  Eva Kummer; Nenad Ban
Journal:  EMBO J       Date:  2020-06-30       Impact factor: 11.598

3.  A tandem active site model for the ribosomal helicase.

Authors:  Hossein Amiri; Harry F Noller
Journal:  FEBS Lett       Date:  2019-04-24       Impact factor: 4.124

4.  Spontaneous ribosomal translocation of mRNA and tRNAs into a chimeric hybrid state.

Authors:  Jie Zhou; Laura Lancaster; John Paul Donohue; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-01       Impact factor: 11.205

Review 5.  Neurospheres: a potential in vitro model for the study of central nervous system disorders.

Authors:  Laura da Silva Siqueira; Fernanda Majolo; Ana Paula Bornes da Silva; Jaderson Costa da Costa; Daniel Rodrigo Marinowic
Journal:  Mol Biol Rep       Date:  2021-03-25       Impact factor: 2.316

Review 6.  Dynamic basis of fidelity and speed in translation: Coordinated multistep mechanisms of elongation and termination.

Authors:  Arjun Prabhakar; Junhong Choi; Jinfan Wang; Alexey Petrov; Joseph D Puglisi
Journal:  Protein Sci       Date:  2017-05-23       Impact factor: 6.725

Review 7.  The parable of the caveman and the Ferrari: protein synthesis and the RNA world.

Authors:  Harry F Noller
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

8.  tRNA Fluctuations Observed on Stalled Ribosomes Are Suppressed during Ongoing Protein Synthesis.

Authors:  Ryan M Jamiolkowski; Chunlai Chen; Barry S Cooperman; Yale E Goldman
Journal:  Biophys J       Date:  2017-12-05       Impact factor: 4.033

9.  The ribosome moves: RNA mechanics and translocation.

Authors:  Harry F Noller; Laura Lancaster; Jie Zhou; Srividya Mohan
Journal:  Nat Struct Mol Biol       Date:  2017-12-07       Impact factor: 15.369

10.  Structure of BipA in GTP form bound to the ratcheted ribosome.

Authors:  Veerendra Kumar; Yun Chen; Rya Ero; Tofayel Ahmed; Jackie Tan; Zhe Li; Andrew See Weng Wong; Shashi Bhushan; Yong-Gui Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-17       Impact factor: 11.205

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