Literature DB >> 28480640

Dynamic basis of fidelity and speed in translation: Coordinated multistep mechanisms of elongation and termination.

Arjun Prabhakar1,2, Junhong Choi1,3, Jinfan Wang1, Alexey Petrov1, Joseph D Puglisi1.   

Abstract

As the universal machine that transfers genetic information from RNA to protein, the ribosome synthesizes proteins with remarkably high fidelity and speed. This is a result of the accurate and efficient decoding of mRNA codons via multistep mechanisms during elongation and termination stages of translation. These mechanisms control how the correct sense codon is recognized by a tRNA for peptide elongation, how the next codon is presented to the decoding center without change of frame during translocation, and how the stop codon is discriminated for timely release of the nascent peptide. These processes occur efficiently through coupling of chemical energy expenditure, ligand interactions, and conformational changes. Understanding this coupling in detail required integration of many techniques that were developed in the past two decades. This multidisciplinary approach has revealed the dynamic nature of translational control and uncovered how external cellular factors such as tRNA abundance and mRNA modifications affect the synthesis of the protein product. Insights from these studies will aid synthetic biology and therapeutic approaches to translation.
© 2017 The Protein Society.

Keywords:  elongation; fidelity; mRNA; ribosome; tRNA; termination; translation

Mesh:

Substances:

Year:  2017        PMID: 28480640      PMCID: PMC5477533          DOI: 10.1002/pro.3190

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  87 in total

1.  Recognition of cognate transfer RNA by the 30S ribosomal subunit.

Authors:  J M Ogle; D E Brodersen; W M Clemons ; M J Tarry; A P Carter; V Ramakrishnan
Journal:  Science       Date:  2001-05-04       Impact factor: 47.728

2.  Release of peptide promoted by the GGQ motif of class 1 release factors regulates the GTPase activity of RF3.

Authors:  Andrei V Zavialov; Liliana Mora; Richard H Buckingham; Måns Ehrenberg
Journal:  Mol Cell       Date:  2002-10       Impact factor: 17.970

3.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

4.  Structure of the Escherichia coli ribosomal termination complex with release factor 2.

Authors:  Bruno P Klaholz; Tillmann Pape; Andrey V Zavialov; Alexander G Myasnikov; Elena V Orlova; Bente Vestergaard; Måns Ehrenberg; Marin van Heel
Journal:  Nature       Date:  2003-01-02       Impact factor: 49.962

5.  Unusual resistance of peptidyl transferase to protein extraction procedures.

Authors:  H F Noller; V Hoffarth; L Zimniak
Journal:  Science       Date:  1992-06-05       Impact factor: 47.728

6.  Rotation of the head of the 30S ribosomal subunit during mRNA translocation.

Authors:  Zhuojun Guo; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-27       Impact factor: 11.205

7.  Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.

Authors:  Kate D Meyer; Yogesh Saletore; Paul Zumbo; Olivier Elemento; Christopher E Mason; Samie R Jaffrey
Journal:  Cell       Date:  2012-05-17       Impact factor: 41.582

Review 8.  Pausing on Polyribosomes: Make Way for Elongation in Translational Control.

Authors:  Joel D Richter; Jeff Coller
Journal:  Cell       Date:  2015-10-08       Impact factor: 41.582

9.  Real time determination of bacterial in vivo ribosome translation elongation speed based on LacZα complementation system.

Authors:  Manlu Zhu; Xiongfeng Dai; Yi-Ping Wang
Journal:  Nucleic Acids Res       Date:  2016-10-05       Impact factor: 16.971

10.  Transcription Impacts the Efficiency of mRNA Translation via Co-transcriptional N6-adenosine Methylation.

Authors:  Boris Slobodin; Ruiqi Han; Vittorio Calderone; Joachim A F Oude Vrielink; Fabricio Loayza-Puch; Ran Elkon; Reuven Agami
Journal:  Cell       Date:  2017-04-06       Impact factor: 41.582

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  9 in total

Review 1.  The roles of structural dynamics in the cellular functions of RNAs.

Authors:  Laura R Ganser; Megan L Kelly; Daniel Herschlag; Hashim M Al-Hashimi
Journal:  Nat Rev Mol Cell Biol       Date:  2019-08       Impact factor: 94.444

2.  Ensemble and single-molecule FRET studies of protein synthesis.

Authors:  Wan-Jung C Lai; Dmitri N Ermolenko
Journal:  Methods       Date:  2017-12-13       Impact factor: 3.608

Review 3.  Single-Molecule Fluorescence Applied to Translation.

Authors:  Arjun Prabhakar; Elisabetta Viani Puglisi; Joseph D Puglisi
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

Review 4.  mRNA Translation Gone Awry: Translation Fidelity and Neurological Disease.

Authors:  Mridu Kapur; Susan L Ackerman
Journal:  Trends Genet       Date:  2018-01-16       Impact factor: 11.639

Review 5.  Regulation of mRNA Translation in Neurons-A Matter of Life and Death.

Authors:  Mridu Kapur; Caitlin E Monaghan; Susan L Ackerman
Journal:  Neuron       Date:  2017-11-01       Impact factor: 17.173

6.  Targeting Translation Termination Machinery with Antisense Oligonucleotides for Diseases Caused by Nonsense Mutations.

Authors:  Lulu Huang; Mariam Aghajan; Tianna Quesenberry; Audrey Low; Susan F Murray; Brett P Monia; Shuling Guo
Journal:  Nucleic Acid Ther       Date:  2019-05-09       Impact factor: 5.486

7.  Engineering Ribosomes to Alleviate Abiotic Stress in Plants: A Perspective.

Authors:  Leticia Dias-Fields; Katarzyna P Adamala
Journal:  Plants (Basel)       Date:  2022-08-12

8.  Effects of codon optimization on coagulation factor IX translation and structure: Implications for protein and gene therapies.

Authors:  Aikaterini Alexaki; Gaya K Hettiarachchi; John C Athey; Upendra K Katneni; Vijaya Simhadri; Nobuko Hamasaki-Katagiri; Puja Nanavaty; Brian Lin; Kazuyo Takeda; Darón Freedberg; Dougald Monroe; Joseph R McGill; Robert Peters; Jacob M Kames; David D Holcomb; Ryan C Hunt; Zuben E Sauna; Amy Gelinas; Nebojsa Janjic; Michael DiCuccio; Haim Bar; Anton A Komar; Chava Kimchi-Sarfaty
Journal:  Sci Rep       Date:  2019-10-29       Impact factor: 4.379

Review 9.  Iron in Translation: From the Beginning to the End.

Authors:  Antonia María Romero; María Teresa Martínez-Pastor; Sergi Puig
Journal:  Microorganisms       Date:  2021-05-13
  9 in total

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