Literature DB >> 29215639

The ribosome moves: RNA mechanics and translocation.

Harry F Noller1, Laura Lancaster1, Jie Zhou1, Srividya Mohan1.   

Abstract

During protein synthesis, mRNA and tRNAs must be moved rapidly through the ribosome while maintaining the translational reading frame. This process is coupled to large- and small-scale conformational rearrangements in the ribosome, mainly in its rRNA. The free energy from peptide-bond formation and GTP hydrolysis is probably used to impose directionality on those movements. We propose that the free energy is coupled to two pawls, namely tRNA and EF-G, which enable two ratchet mechanisms to act separately and sequentially on the two ribosomal subunits.

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Year:  2017        PMID: 29215639      PMCID: PMC6581036          DOI: 10.1038/nsmb.3505

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  58 in total

1.  Crystal structure of the ribosome at 5.5 A resolution.

Authors:  M M Yusupov; G Z Yusupova; A Baucom; K Lieberman; T N Earnest; J H Cate; H F Noller
Journal:  Science       Date:  2001-03-29       Impact factor: 47.728

2.  A ratchet-like inter-subunit reorganization of the ribosome during translocation.

Authors:  J Frank; R K Agrawal
Journal:  Nature       Date:  2000-07-20       Impact factor: 49.962

3.  Recognition of cognate transfer RNA by the 30S ribosomal subunit.

Authors:  J M Ogle; D E Brodersen; W M Clemons ; M J Tarry; A P Carter; V Ramakrishnan
Journal:  Science       Date:  2001-05-04       Impact factor: 47.728

4.  Stimulation of "non-enzymic" translocation in ribosomes by p-chloromercuribenzoate.

Authors:  L P. Gavrilova; A S. Spirin
Journal:  FEBS Lett       Date:  1971-10-01       Impact factor: 4.124

5.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

6.  Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy.

Authors:  Mikel Valle; Andrey Zavialov; Wen Li; Scott M Stagg; Jayati Sengupta; Rikke C Nielsen; Poul Nissen; Stephen C Harvey; Måns Ehrenberg; Joachim Frank
Journal:  Nat Struct Biol       Date:  2003-10-19

7.  Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation.

Authors:  Christian M T Spahn; Maria G Gomez-Lorenzo; Robert A Grassucci; Rene Jørgensen; Gregers R Andersen; Roland Beckmann; Pawel A Penczek; Juan P G Ballesta; Joachim Frank
Journal:  EMBO J       Date:  2004-02-19       Impact factor: 11.598

8.  Base-pairing between 23S rRNA and tRNA in the ribosomal A site.

Authors:  D F Kim; R Green
Journal:  Mol Cell       Date:  1999-11       Impact factor: 17.970

9.  Catalysis of ribosomal translocation by sparsomycin.

Authors:  Kurt Fredrick; Harry F Noller
Journal:  Science       Date:  2003-05-16       Impact factor: 47.728

10.  An elongation factor G-induced ribosome rearrangement precedes tRNA-mRNA translocation.

Authors:  Andreas Savelsbergh; Vladimir I Katunin; Dagmar Mohr; Frank Peske; Marina V Rodnina; Wolfgang Wintermeyer
Journal:  Mol Cell       Date:  2003-06       Impact factor: 17.970

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  25 in total

1.  A tandem active site model for the ribosomal helicase.

Authors:  Hossein Amiri; Harry F Noller
Journal:  FEBS Lett       Date:  2019-04-24       Impact factor: 4.124

2.  Spontaneous ribosomal translocation of mRNA and tRNAs into a chimeric hybrid state.

Authors:  Jie Zhou; Laura Lancaster; John Paul Donohue; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-01       Impact factor: 11.205

3.  Co-temporal Force and Fluorescence Measurements Reveal a Ribosomal Gear Shift Mechanism of Translation Regulation by Structured mRNAs.

Authors:  Varsha P Desai; Filipp Frank; Antony Lee; Maurizio Righini; Laura Lancaster; Harry F Noller; Ignacio Tinoco; Carlos Bustamante
Journal:  Mol Cell       Date:  2019-08-27       Impact factor: 17.970

4.  Hyper-swivel head domain motions are required for complete mRNA-tRNA translocation and ribosome resetting.

Authors:  Wataru Nishima; Dylan Girodat; Mikael Holm; Emily J Rundlet; Jose L Alejo; Kara Fischer; Scott C Blanchard; Karissa Y Sanbonmatsu
Journal:  Nucleic Acids Res       Date:  2022-08-12       Impact factor: 19.160

5.  The cyclic octapeptide antibiotic argyrin B inhibits translation by trapping EF-G on the ribosome during translocation.

Authors:  Maximiliane Wieland; Mikael Holm; Emily J Rundlet; Martino Morici; Timm O Koller; Tinashe P Maviza; Domen Pogorevc; Ilya A Osterman; Rolf Müller; Scott C Blanchard; Daniel N Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-02       Impact factor: 12.779

6.  Didemnin B and ternatin-4 differentially inhibit conformational changes in eEF1A required for aminoacyl-tRNA accommodation into mammalian ribosomes.

Authors:  Manuel F Juette; Jordan D Carelli; Emily J Rundlet; Alan Brown; Sichen Shao; Angelica Ferguson; Michael R Wasserman; Mikael Holm; Jack Taunton; Scott C Blanchard
Journal:  Elife       Date:  2022-10-20       Impact factor: 8.713

Review 7.  Single-Molecule Fluorescence Applied to Translation.

Authors:  Arjun Prabhakar; Elisabetta Viani Puglisi; Joseph D Puglisi
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

8.  Extending the Spacing between the Shine-Dalgarno Sequence and P-Site Codon Reduces the Rate of mRNA Translocation.

Authors:  Hironao Wakabayashi; Chandani Warnasooriya; Dmitri N Ermolenko
Journal:  J Mol Biol       Date:  2020-06-13       Impact factor: 5.469

Review 9.  Diversity and Similarity of Termination and Ribosome Rescue in Bacterial, Mitochondrial, and Cytoplasmic Translation.

Authors:  Andrei A Korostelev
Journal:  Biochemistry (Mosc)       Date:  2021-09       Impact factor: 2.487

Review 10.  Programmed -1 ribosomal frameshifting from the perspective of the conformational dynamics of mRNA and ribosomes.

Authors:  Kai-Chun Chang; Jin-Der Wen
Journal:  Comput Struct Biotechnol J       Date:  2021-06-14       Impact factor: 7.271

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