Literature DB >> 16272117

Structures of the bacterial ribosome at 3.5 A resolution.

Barbara S Schuwirth1, Maria A Borovinskaya, Cathy W Hau, Wen Zhang, Antón Vila-Sanjurjo, James M Holton, Jamie H Doudna Cate.   

Abstract

We describe two structures of the intact bacterial ribosome from Escherichia coli determined to a resolution of 3.5 angstroms by x-ray crystallography. These structures provide a detailed view of the interface between the small and large ribosomal subunits and the conformation of the peptidyl transferase center in the context of the intact ribosome. Differences between the two ribosomes reveal a high degree of flexibility between the head and the rest of the small subunit. Swiveling of the head of the small subunit observed in the present structures, coupled to the ratchet-like motion of the two subunits observed previously, suggests a mechanism for the final movements of messenger RNA (mRNA) and transfer RNAs (tRNAs) during translocation.

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Year:  2005        PMID: 16272117     DOI: 10.1126/science.1117230

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  624 in total

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Authors:  Katherine S Long; Birte Vester
Journal:  Antimicrob Agents Chemother       Date:  2011-12-05       Impact factor: 5.191

2.  The structure of Aquifex aeolicus ribosomal protein S8 reveals a unique subdomain that contributes to an extremely tight association with 16S rRNA.

Authors:  Elena Menichelli; Stephen P Edgcomb; Michael I Recht; James R Williamson
Journal:  J Mol Biol       Date:  2011-11-04       Impact factor: 5.469

3.  The ribosome moves: RNA mechanics and translocation.

Authors:  Harry F Noller; Laura Lancaster; Jie Zhou; Srividya Mohan
Journal:  Nat Struct Mol Biol       Date:  2017-12-07       Impact factor: 15.369

4.  Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits.

Authors:  Ning Gao; Andrey V Zavialov; Måns Ehrenberg; Joachim Frank
Journal:  J Mol Biol       Date:  2007-10-16       Impact factor: 5.469

5.  Structure of the ribosome with elongation factor G trapped in the pretranslocation state.

Authors:  Axel F Brilot; Andrei A Korostelev; Dmitri N Ermolenko; Nikolaus Grigorieff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

6.  Visualization of two transfer RNAs trapped in transit during elongation factor G-mediated translocation.

Authors:  David J F Ramrath; Laura Lancaster; Thiemo Sprink; Thorsten Mielke; Justus Loerke; Harry F Noller; Christian M T Spahn
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

Review 7.  Ribosomal translocation: one step closer to the molecular mechanism.

Authors:  Shinichiro Shoji; Sarah E Walker; Kurt Fredrick
Journal:  ACS Chem Biol       Date:  2009-02-20       Impact factor: 5.100

Review 8.  Repurposing ribosomes for synthetic biology.

Authors:  Yi Liu; Do Soon Kim; Michael C Jewett
Journal:  Curr Opin Chem Biol       Date:  2017-09-01       Impact factor: 8.822

9.  Overexpression of RbfA in the absence of the KsgA checkpoint results in impaired translation initiation.

Authors:  Keith Connolly; Gloria Culver
Journal:  Mol Microbiol       Date:  2013-02-06       Impact factor: 3.501

10.  Ligand- and pH-induced conformational changes of RNA domain helix 69 revealed by 2-aminopurine fluorescence.

Authors:  Yogo Sakakibara; Sanjaya C Abeysirigunawardena; Anne-Cécile E Duc; Danielle N Dremann; Christine S Chow
Journal:  Angew Chem Int Ed Engl       Date:  2012-10-24       Impact factor: 15.336

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