Literature DB >> 32602580

Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.

Eva Kummer1, Nenad Ban1.   

Abstract

Mitochondria are eukaryotic organelles of bacterial origin where respiration takes place to produce cellular chemical energy. These reactions are catalyzed by the respiratory chain complexes located in the inner mitochondrial membrane. Notably, key components of the respiratory chain complexes are encoded on the mitochondrial chromosome and their expression relies on a dedicated mitochondrial translation machinery. Defects in the mitochondrial gene expression machinery lead to a variety of diseases in humans mostly affecting tissues with high energy demand such as the nervous system, the heart, or the muscles. The mitochondrial translation system has substantially diverged from its bacterial ancestor, including alterations in the mitoribosomal architecture, multiple changes to the set of translation factors and striking reductions in otherwise conserved tRNA elements. Although a number of structures of mitochondrial ribosomes from different species have been determined, our mechanistic understanding of the mitochondrial translation cycle remains largely unexplored. Here, we present two cryo-EM reconstructions of human mitochondrial elongation factor G1 bound to the mammalian mitochondrial ribosome at two different steps of the tRNA translocation reaction during translation elongation. Our structures explain the mechanism of tRNA and mRNA translocation on the mitoribosome, the regulation of mtEFG1 activity by the ribosomal GTPase-associated center, and the basis of decreased susceptibility of mtEFG1 to the commonly used antibiotic fusidic acid.
© 2020 The Authors.

Entities:  

Keywords:  cryo-EM; elongation; mitoribosome; mtEFG1; translation

Mesh:

Substances:

Year:  2020        PMID: 32602580      PMCID: PMC7396830          DOI: 10.15252/embj.2020104820

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  98 in total

1.  Reverse translocation of tRNA in the ribosome.

Authors:  Shinichiro Shoji; Sarah E Walker; Kurt Fredrick
Journal:  Mol Cell       Date:  2006-12-28       Impact factor: 17.970

2.  Evolution of elongation factor G and the origins of mitochondrial and chloroplast forms.

Authors:  Gemma C Atkinson; Sandra L Baldauf
Journal:  Mol Biol Evol       Date:  2010-11-22       Impact factor: 16.240

3.  Spontaneous reverse movement of mRNA-bound tRNA through the ribosome.

Authors:  Andrey L Konevega; Niels Fischer; Yuri P Semenkov; Holger Stark; Wolfgang Wintermeyer; Marina V Rodnina
Journal:  Nat Struct Mol Biol       Date:  2007-03-18       Impact factor: 15.369

4.  EF-G-dependent GTPase on the ribosome. conformational change and fusidic acid inhibition.

Authors:  Hyuk-Soo Seo; Sameem Abedin; Detlev Kamp; Daniel N Wilson; Knud H Nierhaus; Barry S Cooperman
Journal:  Biochemistry       Date:  2006-02-28       Impact factor: 3.162

5.  Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.

Authors:  Eva Kummer; Nenad Ban
Journal:  EMBO J       Date:  2020-06-30       Impact factor: 11.598

6.  Control of phosphate release from elongation factor G by ribosomal protein L7/12.

Authors:  Andreas Savelsbergh; Dagmar Mohr; Ute Kothe; Wolfgang Wintermeyer; Marina V Rodnina
Journal:  EMBO J       Date:  2005-11-17       Impact factor: 11.598

7.  Elongation factors EF-G from E. coli and mammalian mitochondria are not functionally interchangeable.

Authors:  N D Denslow; T W O'Brien
Journal:  Biochem Biophys Res Commun       Date:  1979-10-29       Impact factor: 3.575

8.  Contribution of 16S rRNA nucleotides forming the 30S subunit A and P sites to translation in Escherichia coli.

Authors:  Nimo M Abdi; Kurt Fredrick
Journal:  RNA       Date:  2005-09-21       Impact factor: 4.942

9.  A bacterial elongation factor G homologue exclusively functions in ribosome recycling in the spirochaete Borrelia burgdorferi.

Authors:  Takuma Suematsu; Shin-ichi Yokobori; Hiroyuki Morita; Shigeo Yoshinari; Takuya Ueda; Kiyoshi Kita; Nono Takeuchi; Yoh-ichi Watanabe
Journal:  Mol Microbiol       Date:  2010-02-01       Impact factor: 3.501

10.  Control of ribosomal subunit rotation by elongation factor G.

Authors:  Arto Pulk; Jamie H D Cate
Journal:  Science       Date:  2013-06-28       Impact factor: 47.728

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  12 in total

1.  Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.

Authors:  Eva Kummer; Nenad Ban
Journal:  EMBO J       Date:  2020-06-30       Impact factor: 11.598

2.  Mechanism of mitoribosomal small subunit biogenesis and preinitiation.

Authors:  Yuzuru Itoh; Anas Khawaja; Ivan Laptev; Miriam Cipullo; Ilian Atanassov; Petr Sergiev; Joanna Rorbach; Alexey Amunts
Journal:  Nature       Date:  2022-06-08       Impact factor: 69.504

Review 3.  Diversity and Similarity of Termination and Ribosome Rescue in Bacterial, Mitochondrial, and Cytoplasmic Translation.

Authors:  Andrei A Korostelev
Journal:  Biochemistry (Mosc)       Date:  2021-09       Impact factor: 2.487

4.  Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures.

Authors:  David Sehnal; Sebastian Bittrich; Mandar Deshpande; Radka Svobodová; Karel Berka; Václav Bazgier; Sameer Velankar; Stephen K Burley; Jaroslav Koča; Alexander S Rose
Journal:  Nucleic Acids Res       Date:  2021-07-02       Impact factor: 16.971

5.  Reconstitution of mammalian mitochondrial translation system capable of correct initiation and long polypeptide synthesis from leaderless mRNA.

Authors:  Muhoon Lee; Noriko Matsunaga; Shiori Akabane; Ippei Yasuda; Takuya Ueda; Nono Takeuchi-Tomita
Journal:  Nucleic Acids Res       Date:  2021-01-11       Impact factor: 16.971

Review 6.  Maintaining mitochondrial ribosome function: The role of ribosome rescue and recycling factors.

Authors:  Franziska Nadler; Elena Lavdovskaia; Ricarda Richter-Dennerlein
Journal:  RNA Biol       Date:  2021-12-31       Impact factor: 4.652

Review 7.  Mitochondrial Protein Translation: Emerging Roles and Clinical Significance in Disease.

Authors:  Fei Wang; Deyu Zhang; Dejiu Zhang; Peifeng Li; Yanyan Gao
Journal:  Front Cell Dev Biol       Date:  2021-07-01

8.  Distinct mechanisms of the human mitoribosome recycling and antibiotic resistance.

Authors:  Ravi Kiran Koripella; Ayush Deep; Ekansh K Agrawal; Pooja Keshavan; Nilesh K Banavali; Rajendra K Agrawal
Journal:  Nat Commun       Date:  2021-06-14       Impact factor: 14.919

9.  A distinct assembly pathway of the human 39S late pre-mitoribosome.

Authors:  Jingdong Cheng; Otto Berninghausen; Roland Beckmann
Journal:  Nat Commun       Date:  2021-07-27       Impact factor: 14.919

10.  Inactivity of Peptidase ClpP Causes Primary Accumulation of Mitochondrial Disaggregase ClpX with Its Interacting Nucleoid Proteins, and of mtDNA.

Authors:  Jana Key; Sylvia Torres-Odio; Nina C Bach; Suzana Gispert; Gabriele Koepf; Marina Reichlmeir; A Phillip West; Holger Prokisch; Peter Freisinger; William G Newman; Stavit Shalev; Stephan A Sieber; Ilka Wittig; Georg Auburger
Journal:  Cells       Date:  2021-11-29       Impact factor: 6.600

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