Literature DB >> 25186725

Stochasticity of metabolism and growth at the single-cell level.

Daniel J Kiviet1, Philippe Nghe2, Noreen Walker3, Sarah Boulineau3, Vanda Sunderlikova3, Sander J Tans3.   

Abstract

Elucidating the role of molecular stochasticity in cellular growth is central to understanding phenotypic heterogeneity and the stability of cellular proliferation. The inherent stochasticity of metabolic reaction events should have negligible effect, because of averaging over the many reaction events contributing to growth. Indeed, metabolism and growth are often considered to be constant for fixed conditions. Stochastic fluctuations in the expression level of metabolic enzymes could produce variations in the reactions they catalyse. However, whether such molecular fluctuations can affect growth is unclear, given the various stabilizing regulatory mechanisms, the slow adjustment of key cellular components such as ribosomes, and the secretion and buffering of excess metabolites. Here we use time-lapse microscopy to measure fluctuations in the instantaneous growth rate of single cells of Escherichia coli, and quantify time-resolved cross-correlations with the expression of lac genes and enzymes in central metabolism. We show that expression fluctuations of catabolically active enzymes can propagate and cause growth fluctuations, with transmission depending on the limitation of the enzyme to growth. Conversely, growth fluctuations propagate back to perturb expression. Accordingly, enzymes were found to transmit noise to other unrelated genes via growth. Homeostasis is promoted by a noise-cancelling mechanism that exploits fluctuations in the dilution of proteins by cell-volume expansion. The results indicate that molecular noise is propagated not only by regulatory proteins but also by metabolic reactions. They also suggest that cellular metabolism is inherently stochastic, and a generic source of phenotypic heterogeneity.

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Year:  2014        PMID: 25186725     DOI: 10.1038/nature13582

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  28 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-21       Impact factor: 11.205

2.  Interdependence of cell growth and gene expression: origins and consequences.

Authors:  Matthew Scott; Carl W Gunderson; Eduard M Mateescu; Zhongge Zhang; Terence Hwa
Journal:  Science       Date:  2010-11-19       Impact factor: 47.728

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4.  Regulation of ribosome synthesis in Escherichia coli: effects of temperature and dilution rate changes.

Authors:  H S Yun; J Hong; H C Lim
Journal:  Biotechnol Bioeng       Date:  1996-12-05       Impact factor: 4.530

5.  Gene network shaping of inherent noise spectra.

Authors:  D W Austin; M S Allen; J M McCollum; R D Dar; J R Wilgus; G S Sayler; N F Samatova; C D Cox; M L Simpson
Journal:  Nature       Date:  2006-02-02       Impact factor: 49.962

Review 6.  Functional roles for noise in genetic circuits.

Authors:  Avigdor Eldar; Michael B Elowitz
Journal:  Nature       Date:  2010-09-09       Impact factor: 49.962

Review 7.  Regulation of glycogen metabolism in yeast and bacteria.

Authors:  Wayne A Wilson; Peter J Roach; Manuel Montero; Edurne Baroja-Fernández; Francisco José Muñoz; Gustavo Eydallin; Alejandro M Viale; Javier Pozueta-Romero
Journal:  FEMS Microbiol Rev       Date:  2010-11       Impact factor: 16.408

8.  A molecular investigation of genotype by environment interactions.

Authors:  A M Dean
Journal:  Genetics       Date:  1995-01       Impact factor: 4.562

9.  Single-molecule enzymatic dynamics.

Authors:  H P Lu; L Xun; X S Xie
Journal:  Science       Date:  1998-12-04       Impact factor: 47.728

10.  Computational evaluation of cellular metabolic costs successfully predicts genes whose expression is deleterious.

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Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-06       Impact factor: 11.205

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  127 in total

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Journal:  SIAM J Sci Comput       Date:  2016-01-06       Impact factor: 2.373

3.  Mechanistic Origin of Cell-Size Control and Homeostasis in Bacteria.

Authors:  Fangwei Si; Guillaume Le Treut; John T Sauls; Stephen Vadia; Petra Anne Levin; Suckjoon Jun
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4.  A noisy linear map underlies oscillations in cell size and gene expression in bacteria.

Authors:  Yu Tanouchi; Anand Pai; Heungwon Park; Shuqiang Huang; Rumen Stamatov; Nicolas E Buchler; Lingchong You
Journal:  Nature       Date:  2015-06-03       Impact factor: 49.962

Review 5.  Phenotypic Heterogeneity, a Phenomenon That May Explain Why Quorum Sensing Does Not Always Result in Truly Homogenous Cell Behavior.

Authors:  Jessica Grote; Dagmar Krysciak; Wolfgang R Streit
Journal:  Appl Environ Microbiol       Date:  2015-05-29       Impact factor: 4.792

6.  Membrane potential is vital for rapid permeabilization of plasma membranes and lipid bilayers by the antimicrobial peptide lactoferricin B.

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7.  Optical metabolic imaging quantifies heterogeneous cell populations.

Authors:  Alex J Walsh; Melissa C Skala
Journal:  Biomed Opt Express       Date:  2015-01-15       Impact factor: 3.732

Review 8.  Single-Cell Physiology.

Authors:  Sattar Taheri-Araghi; Steven D Brown; John T Sauls; Dustin B McIntosh; Suckjoon Jun
Journal:  Annu Rev Biophys       Date:  2015-02-26       Impact factor: 12.981

9.  Determination of Cell Membrane Capacitance and Conductance via Optically Induced Electrokinetics.

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Journal:  Biophys J       Date:  2017-10-03       Impact factor: 4.033

10.  Deciphering Metabolic Heterogeneity by Single-Cell Analysis.

Authors:  Tom M J Evers; Mazène Hochane; Sander J Tans; Ron M A Heeren; Stefan Semrau; Peter Nemes; Alireza Mashaghi
Journal:  Anal Chem       Date:  2019-10-08       Impact factor: 6.986

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