Literature DB >> 25747591

Single-Cell Physiology.

Sattar Taheri-Araghi1, Steven D Brown, John T Sauls, Dustin B McIntosh, Suckjoon Jun.   

Abstract

Single-cell techniques have a long history of unveiling fundamental paradigms in biology. Recent improvements in the throughput, resolution, and availability of microfluidics, computational power, and genetically encoded fluorescence have led to a modern renaissance in microbial physiology. This resurgence in research activity has offered new perspectives on physiological processes such as growth, cell cycle, and cell size of model organisms such as Escherichia coli. We expect these single-cell techniques, coupled with the molecular revolution of biology's recent half-century, to continue illuminating unforeseen processes and patterns in microorganisms, the bedrock of biological science. In this article we review major open questions in single-cell physiology, provide a brief introduction to the techniques for scientists of diverse backgrounds, and highlight some pervasive issues and their solutions.

Entities:  

Keywords:  cell cycle; growth; microbiology; microfluidics; quantitative biology; systems biology

Mesh:

Year:  2015        PMID: 25747591      PMCID: PMC5672912          DOI: 10.1146/annurev-biophys-060414-034236

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  90 in total

1.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

2.  Genetic regulatory mechanisms in the synthesis of proteins.

Authors:  F JACOB; J MONOD
Journal:  J Mol Biol       Date:  1961-06       Impact factor: 5.469

3.  Bacterial persistence as a phenotypic switch.

Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
Journal:  Science       Date:  2004-08-12       Impact factor: 47.728

4.  A microfluidic chemostat for experiments with bacterial and yeast cells.

Authors:  Alex Groisman; Caroline Lobo; HoJung Cho; J Kyle Campbell; Yann S Dufour; Ann M Stevens; Andre Levchenko
Journal:  Nat Methods       Date:  2005-09       Impact factor: 28.547

5.  Asymmetric segregation of protein aggregates is associated with cellular aging and rejuvenation.

Authors:  Ariel B Lindner; Richard Madden; Alice Demarez; Eric J Stewart; François Taddei
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-19       Impact factor: 11.205

6.  Triplet-relaxation microscopy with bunched pulsed excitation.

Authors:  Gerald Donnert; Christian Eggeling; Stefan W Hell
Journal:  Photochem Photobiol Sci       Date:  2009-03-09       Impact factor: 3.982

7.  Stochasticity of metabolism and growth at the single-cell level.

Authors:  Daniel J Kiviet; Philippe Nghe; Noreen Walker; Sarah Boulineau; Vanda Sunderlikova; Sander J Tans
Journal:  Nature       Date:  2014-09-03       Impact factor: 49.962

8.  Cell-size control and homeostasis in bacteria.

Authors:  Sattar Taheri-Araghi; Serena Bradde; John T Sauls; Norbert S Hill; Petra A Levin; Johan Paulsson; Massimo Vergassola; Suckjoon Jun
Journal:  Curr Biol       Date:  2014-12-24       Impact factor: 10.834

9.  The Escherichia coli K-12 "wild types" W3110 and MG1655 have an rph frameshift mutation that leads to pyrimidine starvation due to low pyrE expression levels.

Authors:  K F Jensen
Journal:  J Bacteriol       Date:  1993-06       Impact factor: 3.490

10.  Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.

Authors:  Koji Hayashi; Naoki Morooka; Yoshihiro Yamamoto; Katsutoshi Fujita; Katsumi Isono; Sunju Choi; Eiichi Ohtsubo; Tomoya Baba; Barry L Wanner; Hirotada Mori; Takashi Horiuchi
Journal:  Mol Syst Biol       Date:  2006-02-21       Impact factor: 11.429

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  25 in total

Review 1.  Adder and a coarse-grained approach to cell size homeostasis in bacteria.

Authors:  John T Sauls; Dongyang Li; Suckjoon Jun
Journal:  Curr Opin Cell Biol       Date:  2016-02-20       Impact factor: 8.382

2.  Growing from a few cells: combined effects of initial stochasticity and cell-to-cell variability.

Authors:  A Barizien; M S Suryateja Jammalamadaka; G Amselem; Charles N Baroud
Journal:  J R Soc Interface       Date:  2019-04-26       Impact factor: 4.118

Review 3.  Microbial phenomics linking the phenotype to function: The potential of Raman spectroscopy.

Authors:  Jin-Kyung Hong; Soo Bin Kim; Eun Sun Lyou; Tae Kwon Lee
Journal:  J Microbiol       Date:  2021-01-26       Impact factor: 3.422

Review 4.  Sizing up the bacterial cell cycle.

Authors:  Lisa Willis; Kerwyn Casey Huang
Journal:  Nat Rev Microbiol       Date:  2017-08-14       Impact factor: 60.633

5.  Generalized Swift-Hohenberg models for dense active suspensions.

Authors:  Anand U Oza; Sebastian Heidenreich; Jörn Dunkel
Journal:  Eur Phys J E Soft Matter       Date:  2016-10-25       Impact factor: 1.890

6.  Single-cell Microfluidic Analysis of Bacillus subtilis.

Authors:  Matthew T Cabeen; Richard Losick
Journal:  J Vis Exp       Date:  2018-01-26       Impact factor: 1.355

Review 7.  Fundamental principles in bacterial physiology-history, recent progress, and the future with focus on cell size control: a review.

Authors:  Suckjoon Jun; Fangwei Si; Rami Pugatch; Matthew Scott
Journal:  Rep Prog Phys       Date:  2018-01-09

8.  The emergence of metabolic heterogeneity and diverse growth responses in isogenic bacterial cells.

Authors:  Emrah Şimşek; Minsu Kim
Journal:  ISME J       Date:  2018-01-15       Impact factor: 10.302

Review 9.  Next-generation physiology approaches to study microbiome function at single cell level.

Authors:  Roland Hatzenpichler; Viola Krukenberg; Rachel L Spietz; Zackary J Jay
Journal:  Nat Rev Microbiol       Date:  2020-02-13       Impact factor: 60.633

10.  Initial cell density encodes proliferative potential in cancer cell populations.

Authors:  Chiara Enrico Bena; Marco Del Giudice; Alice Grob; Thomas Gueudré; Mattia Miotto; Dimitra Gialama; Matteo Osella; Emilia Turco; Francesca Ceroni; Andrea De Martino; Carla Bosia
Journal:  Sci Rep       Date:  2021-03-17       Impact factor: 4.379

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