Literature DB >> 31549807

Deciphering Metabolic Heterogeneity by Single-Cell Analysis.

Tom M J Evers1, Mazène Hochane2, Sander J Tans3, Ron M A Heeren4, Stefan Semrau2, Peter Nemes5, Alireza Mashaghi1.   

Abstract

Single-cell analysis provides insights into cellular heterogeneity and dynamics of individual cells. This Feature highlights recent developments in key analytical techniques suited for single-cell metabolic analysis with a special focus on mass spectrometry-based analytical platforms and RNA-seq as well as imaging techniques that reveal stochasticity in metabolism.

Entities:  

Year:  2019        PMID： 31549807      PMCID： PMC6922888          DOI： 10.1021/acs.analchem.9b02410

Source DB:  PubMed          Journal:  Anal Chem        ISSN： 0003-2700            Impact factor:   6.986


  118 in total

Review 1.  Challenges and opportunities in cryo-EM single-particle analysis.

Authors:  Dmitry Lyumkis
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

2.  Tapered-Tip Capillary Electrophoresis Nano-Electrospray Ionization Mass Spectrometry for Ultrasensitive Proteomics: the Mouse Cortex.

Authors:  Sam B Choi; Marta Zamarbide; M Chiara Manzini; Peter Nemes
Journal:  J Am Soc Mass Spectrom       Date:  2016-11-16       Impact factor: 3.109

3.  Exploiting the nanoparticle plasmon effect: observing drug delivery dynamics in single cells via Raman/fluorescence imaging spectroscopy.

Authors:  Bin Kang; Marwa M Afifi; Lauren A Austin; Mostafa A El-Sayed
Journal:  ACS Nano       Date:  2013-08-15       Impact factor: 15.881

4.  Single-cell MALDI-MS as an analytical tool for studying intrapopulation metabolic heterogeneity of unicellular organisms.

Authors:  Andrea Amantonico; Pawel L Urban; Stephan R Fagerer; Roman M Balabin; Renato Zenobi
Journal:  Anal Chem       Date:  2010-09-01       Impact factor: 6.986

5.  Cell-specific localization of alkaloids in Catharanthus roseus stem tissue measured with Imaging MS and Single-cell MS.

Authors:  Kotaro Yamamoto; Katsutoshi Takahashi; Hajime Mizuno; Aya Anegawa; Kimitsune Ishizaki; Hidehiro Fukaki; Miwa Ohnishi; Mami Yamazaki; Tsutomu Masujima; Tetsuro Mimura
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-21       Impact factor: 11.205

6.  Single Cell Proteomics Using Frog (Xenopus laevis) Blastomeres Isolated from Early Stage Embryos, Which Form a Geometric Progression in Protein Content.

Authors:  Liangliang Sun; Kyle M Dubiak; Elizabeth H Peuchen; Zhenbin Zhang; Guijie Zhu; Paul W Huber; Norman J Dovichi
Journal:  Anal Chem       Date:  2016-06-22       Impact factor: 6.986

7.  Imaging intratumoral metabolic heterogeneity.

Authors:  Alex J Walsh; Joe T Sharick; Melissa C Skala
Journal:  Nat Biomed Eng       Date:  2019-05       Impact factor: 25.671

8.  Metabolomics Analysis Reveals that AICAR Affects Glycerolipid, Ceramide and Nucleotide Synthesis Pathways in INS-1 Cells.

Authors:  Mahmoud A ElAzzouny; Charles R Evans; Charles F Burant; Robert T Kennedy
Journal:  PLoS One       Date:  2015-06-24       Impact factor: 3.240

9.  Fundamental limits on dynamic inference from single-cell snapshots.

Authors:  Caleb Weinreb; Samuel Wolock; Betsabeh K Tusi; Merav Socolovsky; Allon M Klein
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-20       Impact factor: 11.205

10.  Mammalian heart renewal by pre-existing cardiomyocytes.

Authors:  Samuel E Senyo; Matthew L Steinhauser; Christie L Pizzimenti; Vicky K Yang; Lei Cai; Mei Wang; Ting-Di Wu; Jean-Luc Guerquin-Kern; Claude P Lechene; Richard T Lee
Journal:  Nature       Date:  2012-12-05       Impact factor: 49.962
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  26 in total

1.  Spatial Metabolomics and Imaging Mass Spectrometry in the Age of Artificial Intelligence.

Authors:  Theodore Alexandrov
Journal:  Annu Rev Biomed Data Sci       Date:  2020-04-13

Review 2.  Towards high throughput and high information coverage: advanced single-cell mass spectrometric techniques.

Authors:  Shuting Xu; Cheng Yang; Xiuping Yan; Huwei Liu
Journal:  Anal Bioanal Chem       Date:  2021-08-26       Impact factor: 4.142

3.  Simulating single-cell metabolism using a stochastic flux-balance analysis algorithm.

Authors:  David S Tourigny; Arthur P Goldberg; Jonathan R Karr
Journal:  Biophys J       Date:  2021-10-30       Impact factor: 4.033

4.  Combining Micropunch Histology and Multidimensional Lipidomic Measurements for In-Depth Tissue Mapping.

Authors:  Melanie T Odenkirk; Brian M Horman; James N Dodds; Heather B Patisaul; Erin S Baker
Journal:  ACS Meas Sci Au       Date:  2021-10-28

Review 5.  Metabolic flux between organs measured by arteriovenous metabolite gradients.

Authors:  Hosung Bae; Katie Lam; Cholsoon Jang
Journal:  Exp Mol Med       Date:  2022-09-08       Impact factor: 12.153

6.  Analysis of Peptide Stereochemistry in Single Cells by Capillary Electrophoresis-Trapped Ion Mobility Spectrometry Mass Spectrometry.

Authors:  David H Mast; Hsiao-Wei Liao; Elena V Romanova; Jonathan V Sweedler
Journal:  Anal Chem       Date:  2021-04-07       Impact factor: 6.986

Review 7.  Reciprocal regulation of cellular mechanics and metabolism.

Authors:  Tom M J Evers; Liam J Holt; Simon Alberti; Alireza Mashaghi
Journal:  Nat Metab       Date:  2021-04-19

8.  Multicolor fluorescence biosensors reveal a burning need for diversity in the single-cell metabolic landscape.

Authors:  Md Torikul Islam; William L Holland; Lisa A Lesniewski
Journal:  Trends Endocrinol Metab       Date:  2021-05-07       Impact factor: 10.586

Review 9.  A guide to interrogating immunometabolism.

Authors:  Kelsey Voss; Hanna S Hong; Jackie E Bader; Ayaka Sugiura; Costas A Lyssiotis; Jeffrey C Rathmell
Journal:  Nat Rev Immunol       Date:  2021-04-15       Impact factor: 108.555

Review 10.  Decoding Cancer Biology One Cell at a Time.

Authors:  Itay Tirosh; Mario L Suvà; L Nicolas Gonzalez Castro
Journal:  Cancer Discov       Date:  2021-04       Impact factor: 38.272
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