Literature DB >> 25139985

Experimental basis for a new allosteric model for multisubunit proteins.

Cristiano Viappiani1, Stefania Abbruzzetti2, Luca Ronda3, Stefano Bettati3, Eric R Henry4, Andrea Mozzarelli5, William A Eaton6.   

Abstract

Monod, Wyman, and Changeux (MWC) explained allostery in multisubunit proteins with a widely applied theoretical model in which binding of small molecules, so-called allosteric effectors, affects reactivity by altering the equilibrium between more reactive (R) and less reactive (T) quaternary structures. In their model, each quaternary structure has a single reactivity. Here, we use silica gels to trap protein conformations and a new kind of laser photolysis experiment to show that hemoglobin, the paradigm of allostery, exhibits two ligand binding phases with the same fast and slow rates in both R and T quaternary structures. Allosteric effectors change the fraction of each phase but not the rates. These surprising results are readily explained by the simplest possible extension of the MWC model to include a preequilibrium between two tertiary conformations that have the same functional properties within each quaternary structure. They also have important implications for the long-standing question of a structural explanation for the difference in hemoglobin oxygen affinity of the two quaternary structures.

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Year:  2014        PMID: 25139985      PMCID: PMC4156698          DOI: 10.1073/pnas.1413566111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  53 in total

Review 1.  Spectroscopic contributions to the understanding of hemoglobin function: implications for structural biology.

Authors:  R G Shulman
Journal:  IUBMB Life       Date:  2001-06       Impact factor: 3.885

Review 2.  Allosteric interpretation of haemoglobin properties.

Authors:  R G Shulman; J J Hopfield; S Ogawa
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3.  A tertiary two-state allosteric model for hemoglobin.

Authors:  Eric R Henry; Stefano Bettati; James Hofrichter; William A Eaton
Journal:  Biophys Chem       Date:  2002-07-10       Impact factor: 2.352

4.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

Review 5.  Allostery and cooperativity revisited.

Authors:  Qiang Cui; Martin Karplus
Journal:  Protein Sci       Date:  2008-06-17       Impact factor: 6.725

Review 6.  Can a two-state MWC allosteric model explain hemoglobin kinetics?

Authors:  E R Henry; C M Jones; J Hofrichter; W A Eaton
Journal:  Biochemistry       Date:  1997-05-27       Impact factor: 3.162

7.  The effect of quaternary structure on the kinetics of conformational changes and nanosecond geminate rebinding of carbon monoxide to hemoglobin.

Authors:  L P Murray; J Hofrichter; E R Henry; M Ikeda-Saito; K Kitagishi; T Yonetani; W A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

8.  Heme reactivity is uncoupled from quaternary structure in gel-encapsulated hemoglobin: a resonance Raman spectroscopic study.

Authors:  Eric M Jones; Gurusamy Balakrishnan; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2012-02-09       Impact factor: 15.419

9.  Selective oxidation of methionine beta(55)D6 at the alpha 1 beta 1 interface in hemoglobin completely destabilizes the T-state.

Authors:  G Amiconi; F Ascoli; D Barra; A Bertollini; R M Matarese; D Verzili; M Brunori
Journal:  J Biol Chem       Date:  1989-10-25       Impact factor: 5.157

Review 10.  Structural and energetic basis of allostery.

Authors:  Vincent J Hilser; James O Wrabl; Hesam N Motlagh
Journal:  Annu Rev Biophys       Date:  2012       Impact factor: 12.981

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  22 in total

1.  Mechanistic Models Fit to Variable Temperature Calorimetric Data Provide Insights into Cooperativity.

Authors:  Elihu C Ihms; Ian R Kleckner; Paul Gollnick; Mark P Foster
Journal:  Biophys J       Date:  2017-04-11       Impact factor: 4.033

2.  Experiments on Hemoglobin in Single Crystals and Silica Gels Distinguish among Allosteric Models.

Authors:  Eric R Henry; Andrea Mozzarelli; Cristiano Viappiani; Stefania Abbruzzetti; Stefano Bettati; Luca Ronda; Stefano Bruno; William A Eaton
Journal:  Biophys J       Date:  2015-05-30       Impact factor: 4.033

Review 3.  Unpicking allosteric mechanisms of homo-oligomeric proteins by determining their successive ligand binding constants.

Authors:  Ranit Gruber; Amnon Horovitz
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-19       Impact factor: 6.237

Review 4.  Signalling networks and dynamics of allosteric transitions in bacterial chaperonin GroEL: implications for iterative annealing of misfolded proteins.

Authors:  D Thirumalai; Changbong Hyeon
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-19       Impact factor: 6.237

Review 5.  New look at hemoglobin allostery.

Authors:  Yue Yuan; Ming F Tam; Virgil Simplaceanu; Chien Ho
Journal:  Chem Rev       Date:  2015-01-21       Impact factor: 60.622

Review 6.  Structural origin of cooperativity in human hemoglobin: a view from different roles of α and β subunits in the α2β2 tetramer.

Authors:  Shigenori Nagatomo; Masako Nagai; Teizo Kitagawa
Journal:  Biophys Rev       Date:  2022-04-18

7.  Dynamics of Quaternary Structure Transitions in R-State Carbonmonoxyhemoglobin Unveiled in Time-Resolved X-ray Scattering Patterns Following a Temperature Jump.

Authors:  Hyun Sun Cho; Friedrich Schotte; Valentyn Stadnytskyi; Anthony DiChiara; Robert Henning; Philip Anfinrud
Journal:  J Phys Chem B       Date:  2018-10-16       Impact factor: 2.991

8.  Interface Residues That Drive Allosteric Transitions Also Control the Assembly of l-Lactate Dehydrogenase.

Authors:  Jie Chen; D Thirumalai
Journal:  J Phys Chem B       Date:  2018-08-27       Impact factor: 2.991

Review 9.  From protein structure to function via single crystal optical spectroscopy.

Authors:  Luca Ronda; Stefano Bruno; Stefano Bettati; Paola Storici; Andrea Mozzarelli
Journal:  Front Mol Biosci       Date:  2015-04-28

Review 10.  Impact of hemoglobin biophysical studies on molecular pathogenesis and drug therapy for sickle cell disease.

Authors:  William A Eaton
Journal:  Mol Aspects Med       Date:  2021-07-14
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