Literature DB >> 29735730

Unpicking allosteric mechanisms of homo-oligomeric proteins by determining their successive ligand binding constants.

Ranit Gruber1, Amnon Horovitz2.   

Abstract

Advances in native mass spectrometry and single-molecule techniques have made it possible in recent years to determine the values of successive ligand binding constants for large multi-subunit proteins. Given these values, it is possible to distinguish between different allosteric mechanisms and, thus, obtain insights into how various bio-molecular machines work. Here, we describe for ring-shaped homo-oligomers, in particular, how the relationship between the values of successive ligand binding constants is diagnostic for concerted, sequential and probabilistic allosteric mechanisms.This article is part of a discussion meeting issue 'Allostery and molecular machines'.
© 2018 The Author(s).

Keywords:  chaperonins; cooperativity; native mass spectrometry; ring-shaped oligomers; single-molecule techniques

Mesh:

Substances:

Year:  2018        PMID: 29735730      PMCID: PMC5941171          DOI: 10.1098/rstb.2017.0176

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  20 in total

Review 1.  Allosteric Mechanisms in Chaperonin Machines.

Authors:  Ranit Gruber; Amnon Horovitz
Journal:  Chem Rev       Date:  2016-01-04       Impact factor: 60.622

2.  Sequential ATP-induced allosteric transitions of the cytoplasmic chaperonin containing TCP-1 revealed by EM analysis.

Authors:  Dalia Rivenzon-Segal; Sharon G Wolf; Liat Shimon; Keith R Willison; Amnon Horovitz
Journal:  Nat Struct Mol Biol       Date:  2005-02-06       Impact factor: 15.369

Review 3.  Allostery and cooperativity revisited.

Authors:  Qiang Cui; Martin Karplus
Journal:  Protein Sci       Date:  2008-06-17       Impact factor: 6.725

4.  Sequential allosteric mechanism of ATP hydrolysis by the CCT/TRiC chaperone is revealed through Arrhenius analysis.

Authors:  Ranit Gruber; Michael Levitt; Amnon Horovitz
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-01       Impact factor: 11.205

5.  Mechanical operation and intersubunit coordination of ring-shaped molecular motors: insights from single-molecule studies.

Authors:  Shixin Liu; Gheorghe Chistol; Carlos Bustamante
Journal:  Biophys J       Date:  2014-05-06       Impact factor: 4.033

Review 6.  Mechanisms of cooperativity and allosteric regulation in proteins.

Authors:  M F Perutz
Journal:  Q Rev Biophys       Date:  1989-05       Impact factor: 5.318

7.  Allostery without conformational change. A plausible model.

Authors:  A Cooper; D T Dryden
Journal:  Eur Biophys J       Date:  1984       Impact factor: 1.733

8.  Sensing cooperativity in ATP hydrolysis for single multisubunit enzymes in solution.

Authors:  Yan Jiang; Nicholai R Douglas; Nicholas R Conley; Erik J Miller; Judith Frydman; W E Moerner
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-06       Impact factor: 11.205

9.  Dynamic allostery in the ring protein TRAP.

Authors:  Jonathan G Heddle; Tomoyuki Okajima; David J Scott; Satoko Akashi; Sam-Yong Park; Jeremy R H Tame
Journal:  J Mol Biol       Date:  2007-05-22       Impact factor: 5.469

10.  Dynamically driven protein allostery.

Authors:  Nataliya Popovych; Shangjin Sun; Richard H Ebright; Charalampos G Kalodimos
Journal:  Nat Struct Mol Biol       Date:  2006-08-13       Impact factor: 15.369

View more
  6 in total

1.  Allostery and molecular machines.

Authors:  George H Lorimer; Amnon Horovitz; Tom McLeish
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-19       Impact factor: 6.237

2.  GroEL Allostery Illuminated by a Relationship between the Hill Coefficient and the MWC Model.

Authors:  Ranit Gruber; Tridib Mondal; Amnon Horovitz
Journal:  Biophys J       Date:  2019-10-22       Impact factor: 4.033

Review 3.  Iterative annealing mechanism explains the functions of the GroEL and RNA chaperones.

Authors:  D Thirumalai; George H Lorimer; Changbong Hyeon
Journal:  Protein Sci       Date:  2019-12-23       Impact factor: 6.725

4.  Allosteric conformational ensembles have unlimited capacity for integrating information.

Authors:  John W Biddle; Rosa Martinez-Corral; Felix Wong; Jeremy Gunawardena
Journal:  Elife       Date:  2021-06-09       Impact factor: 8.140

5.  Cooperativity in ATP Hydrolysis by MopR Is Modulated by Its Signal Reception Domain and by Its Protein and Phenol Concentrations.

Authors:  Jayanti Singh; Ruchi Anand; Amnon Horovitz
Journal:  J Bacteriol       Date:  2022-07-18       Impact factor: 3.476

6.  Discriminating between Concerted and Sequential Allosteric Mechanisms by Comparing Equilibrium and Kinetic Hill Coefficients.

Authors:  Amnon Horovitz; Tridib Mondal
Journal:  J Phys Chem B       Date:  2021-01-05       Impact factor: 2.991

  6 in total

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