Literature DB >> 26038112

Experiments on Hemoglobin in Single Crystals and Silica Gels Distinguish among Allosteric Models.

Eric R Henry1, Andrea Mozzarelli2, Cristiano Viappiani3, Stefania Abbruzzetti4, Stefano Bettati5, Luca Ronda5, Stefano Bruno6, William A Eaton7.   

Abstract

Trapping quaternary structures of hemoglobin in single crystals or by encapsulation in silica gels has provided a demanding set of data to test statistical mechanical models of allostery. In this work, we compare the results of those experiments with predictions of the four major allosteric models for hemoglobin: the quaternary two-state model of Monod, Wyman, and Changeux; the tertiary two-state model of Henry et al., which is the simplest extension of the Monod-Wyman-Changeux model to include pre-equilibria of tertiary as well as quaternary conformations; the structure-based model of Szabo and Karplus; and the modification of the latter model by Lee and Karplus. We show that only the tertiary two-state model can provide a near quantitative explanation of the single-crystal and gel experimental results.
Copyright © 2015 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26038112      PMCID: PMC4576146          DOI: 10.1016/j.bpj.2015.04.037

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  57 in total

Review 1.  Spectroscopic contributions to the understanding of hemoglobin function: implications for structural biology.

Authors:  R G Shulman
Journal:  IUBMB Life       Date:  2001-06       Impact factor: 3.885

2.  A tertiary two-state allosteric model for hemoglobin.

Authors:  Eric R Henry; Stefano Bettati; James Hofrichter; William A Eaton
Journal:  Biophys Chem       Date:  2002-07-10       Impact factor: 2.352

Review 3.  Network-based models as tools hinting at nonevident protein functionality.

Authors:  Canan Atilgan; Osman Burak Okan; Ali Rana Atilgan
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

Review 4.  Can a two-state MWC allosteric model explain hemoglobin kinetics?

Authors:  E R Henry; C M Jones; J Hofrichter; W A Eaton
Journal:  Biochemistry       Date:  1997-05-27       Impact factor: 3.162

5.  The contribution of the asymmetric alpha 1beta 1 half-oxygenated intermediate to human hemoglobin cooperativity.

Authors:  Kyung-Mook Yun; Hideki Morimoto; Naoya Shibayama
Journal:  J Biol Chem       Date:  2001-11-19       Impact factor: 5.157

Review 6.  Mechanisms of cooperativity and allosteric regulation in proteins.

Authors:  M F Perutz
Journal:  Q Rev Biophys       Date:  1989-05       Impact factor: 5.318

7.  Analyses of oxygen equilibria of native and chemically modified human adult hemoglobins on the basis of Adair's stepwise oxygenation theory and the allosteric model of Monod, Wyman, and Changeux.

Authors:  K Imai
Journal:  Biochemistry       Date:  1973-02-27       Impact factor: 3.162

8.  Structure-specific model of hemoglobin cooperativity.

Authors:  A W Lee; M Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  1983-12       Impact factor: 11.205

Review 9.  Global dynamics of proteins: bridging between structure and function.

Authors:  Ivet Bahar; Timothy R Lezon; Lee-Wei Yang; Eran Eyal
Journal:  Annu Rev Biophys       Date:  2010       Impact factor: 12.981

Review 10.  Structural and energetic basis of allostery.

Authors:  Vincent J Hilser; James O Wrabl; Hesam N Motlagh
Journal:  Annu Rev Biophys       Date:  2012       Impact factor: 12.981

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  16 in total

1.  Half a Century of Hemoglobin's Allostery.

Authors:  Maurizio Brunori
Journal:  Biophys J       Date:  2015-07-16       Impact factor: 4.033

Review 2.  Treating sickle cell disease by targeting HbS polymerization.

Authors:  William A Eaton; H Franklin Bunn
Journal:  Blood       Date:  2017-04-06       Impact factor: 22.113

3.  Direct observation of conformational population shifts in crystalline human hemoglobin.

Authors:  Naoya Shibayama; Mio Ohki; Jeremy R H Tame; Sam-Yong Park
Journal:  J Biol Chem       Date:  2017-09-20       Impact factor: 5.157

4.  Universality of supersaturation in protein-fiber formation.

Authors:  Troy Cellmer; Frank A Ferrone; William A Eaton
Journal:  Nat Struct Mol Biol       Date:  2016-03-28       Impact factor: 15.369

5.  Theoretical Simulation of Red Cell Sickling Upon Deoxygenation Based on the Physical Chemistry of Sickle Hemoglobin Fiber Formation.

Authors:  Emily B Dunkelberger; Belhu Metaferia; Troy Cellmer; Eric R Henry
Journal:  J Phys Chem B       Date:  2018-09-18       Impact factor: 2.991

6.  Interface Residues That Drive Allosteric Transitions Also Control the Assembly of l-Lactate Dehydrogenase.

Authors:  Jie Chen; D Thirumalai
Journal:  J Phys Chem B       Date:  2018-08-27       Impact factor: 2.991

7.  Treatment of sickle cell disease by increasing oxygen affinity of hemoglobin.

Authors:  Eric R Henry; Belhu Metaferia; Quan Li; Julia Harper; Robert B Best; Kristen E Glass; Troy Cellmer; Emily B Dunkelberger; Anna Conrey; Swee Lay Thein; H Franklin Bunn; William A Eaton
Journal:  Blood       Date:  2021-09-30       Impact factor: 25.476

8.  Using the MWC model to describe heterotropic interactions in hemoglobin.

Authors:  Olga Rapp; Ofer Yifrach
Journal:  PLoS One       Date:  2017-08-09       Impact factor: 3.240

Review 9.  Impact of hemoglobin biophysical studies on molecular pathogenesis and drug therapy for sickle cell disease.

Authors:  William A Eaton
Journal:  Mol Aspects Med       Date:  2021-07-14

10.  Thermal stability, storage and release of proteins with tailored fit in silica.

Authors:  Yun-Chu Chen; Tristan Smith; Robert H Hicks; Aswin Doekhie; Francoise Koumanov; Stephen A Wells; Karen J Edler; Jean van den Elsen; Geoffrey D Holman; Kevin J Marchbank; Asel Sartbaeva
Journal:  Sci Rep       Date:  2017-04-24       Impact factor: 4.379

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