Literature DB >> 12128196

A tertiary two-state allosteric model for hemoglobin.

Eric R Henry1, Stefano Bettati, James Hofrichter, William A Eaton.   

Abstract

The two-state allosteric model of Monod, Wyman, and Changeux (MWC) provides an excellent description of homotropic effects in a vast array of equilibrium and kinetic measurements on cooperative ligand binding by hemoglobin. However, in contrast to experimental observations, the model does not allow for alteration of the ligand affinity of the T quaternary structure by allosteric effectors. This failure to explain heterotropic effects has been appreciated for over 30 years, and it has been generally assumed to result from tertiary conformational changes in the absence of a quaternary change. Here we explore a model that preserves the essential MWC idea that binding without a quaternary conformational change is non-cooperative, but where tertiary conformations of individual subunits play the primary role instead of the quaternary conformations. In this model, which we call the 'tertiary two-state (TTS) model', the two affinity states correspond to two tertiary conformations of individual subunits rather than the two quaternary conformations of the MWC two-state allosteric model. Ligation and the R quaternary structure bias the subunit population toward the high affinity tertiary conformation, while deligation and the T quaternary structure favor the low affinity tertiary conformation. We show that the model is successful in quantitatively explaining a demanding set of kinetic data from nanosecond carbon monoxide photodissociation experiments at times longer than approximately 1 micros. Better agreement between the model and the submicrosecond kinetic data may result from detailed considerations of the distribution and dynamics of conformational substates of the two tertiary conformations. The model is consistent with the results of solution, gel, and single crystal oxygen binding studies, but underestimates the population of doubly-liganded molecules determined in low-temperature electrophoresis experiments.

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Year:  2002        PMID: 12128196     DOI: 10.1016/s0301-4622(02)00091-1

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  41 in total

1.  New insights into allosteric mechanisms from trapping unstable protein conformations in silica gels.

Authors:  Cristiano Viappiani; Stefano Bettati; Stefano Bruno; Luca Ronda; Stefania Abbruzzetti; Andrea Mozzarelli; William A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-22       Impact factor: 11.205

Review 2.  Haemoglobin-based oxygen carriers: research and reality towards an alternative to blood transfusions.

Authors:  Andrea Mozzarelli; Luca Ronda; Serena Faggiano; Stefano Bettati; Stefano Bruno
Journal:  Blood Transfus       Date:  2010-06       Impact factor: 3.443

3.  Modulation of reactivity and conformation within the T-quaternary state of human hemoglobin: the combined use of mutagenesis and sol-gel encapsulation.

Authors:  Uri Samuni; Camille J Roche; David Dantsker; Laura J Juszczak; Joel M Friedman
Journal:  Biochemistry       Date:  2006-03-07       Impact factor: 3.162

4.  Circular dichroism spectroscopy of tertiary and quaternary conformations of human hemoglobin entrapped in wet silica gels.

Authors:  Luca Ronda; Stefano Bruno; Cristiano Viappiani; Stefania Abbruzzetti; Andrea Mozzarelli; Kenneth C Lowe; Stefano Bettati
Journal:  Protein Sci       Date:  2006-07-05       Impact factor: 6.725

Review 5.  Allostery and cooperativity revisited.

Authors:  Qiang Cui; Martin Karplus
Journal:  Protein Sci       Date:  2008-06-17       Impact factor: 6.725

6.  Unsuspected pathway of the allosteric transition in hemoglobin.

Authors:  Stefan Fischer; Kenneth W Olsen; Kwangho Nam; Martin Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-17       Impact factor: 11.205

Review 7.  Therapeutic strategies to alter the oxygen affinity of sickle hemoglobin.

Authors:  Martin K Safo; Gregory J Kato
Journal:  Hematol Oncol Clin North Am       Date:  2014-01-21       Impact factor: 3.722

8.  Tertiary and quaternary allostery in tetrameric hemoglobin from Scapharca inaequivalvis.

Authors:  Luca Ronda; Stefano Bettati; Eric R Henry; Tara Kashav; Jeffrey M Sanders; William E Royer; Andrea Mozzarelli
Journal:  Biochemistry       Date:  2013-03-15       Impact factor: 3.162

9.  Spontaneous quaternary and tertiary T-R transitions of human hemoglobin in molecular dynamics simulation.

Authors:  Jochen S Hub; Marcus B Kubitzki; Bert L de Groot
Journal:  PLoS Comput Biol       Date:  2010-05-06       Impact factor: 4.475

10.  Scalable rule-based modelling of allosteric proteins and biochemical networks.

Authors:  Julien F Ollivier; Vahid Shahrezaei; Peter S Swain
Journal:  PLoS Comput Biol       Date:  2010-11-04       Impact factor: 4.475

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