Literature DB >> 25108686

Visualizing a protein quake with time-resolved X-ray scattering at a free-electron laser.

David Arnlund1, Linda C Johansson1, Cecilia Wickstrand1, Anton Barty2, Garth J Williams3, Erik Malmerberg1, Jan Davidsson4, Despina Milathianaki3, Daniel P DePonte5, Robert L Shoeman6, Dingjie Wang7, Daniel James7, Gergely Katona1, Sebastian Westenhoff1, Thomas A White2, Andrew Aquila2, Sadia Bari8, Peter Berntsen1, Mike Bogan9, Tim Brandt van Driel10, R Bruce Doak11, Kasper Skov Kjær12, Matthias Frank13, Raimund Fromme14, Ingo Grotjohann14, Robert Henning15, Mark S Hunter14, Richard A Kirian7, Irina Kosheleva15, Christopher Kupitz14, Mengning Liang2, Andrew V Martin2, Martin Meedom Nielsen10, Marc Messerschmidt5, M Marvin Seibert3, Jennie Sjöhamn1, Francesco Stellato2, Uwe Weierstall7, Nadia A Zatsepin7, John C H Spence7, Petra Fromme14, Ilme Schlichting6, Sébastien Boutet3, Gerrit Groenhof16, Henry N Chapman17, Richard Neutze1.   

Abstract

We describe a method to measure ultrafast protein structural changes using time-resolved wide-angle X-ray scattering at an X-ray free-electron laser. We demonstrated this approach using multiphoton excitation of the Blastochloris viridis photosynthetic reaction center, observing an ultrafast global conformational change that arises within picoseconds and precedes the propagation of heat through the protein. This provides direct structural evidence for a 'protein quake': the hypothesis that proteins rapidly dissipate energy through quake-like structural motions.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 25108686      PMCID: PMC4149589          DOI: 10.1038/nmeth.3067

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  29 in total

1.  A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations.

Authors:  Yong Duan; Chun Wu; Shibasish Chowdhury; Mathew C Lee; Guoming Xiong; Wei Zhang; Rong Yang; Piotr Cieplak; Ray Luo; Taisung Lee; James Caldwell; Junmei Wang; Peter Kollman
Journal:  J Comput Chem       Date:  2003-12       Impact factor: 3.376

2.  Canonical sampling through velocity rescaling.

Authors:  Giovanni Bussi; Davide Donadio; Michele Parrinello
Journal:  J Chem Phys       Date:  2007-01-07       Impact factor: 3.488

3.  Intense terahertz pulses by four-wave rectification in air.

Authors:  D J Cook; R M Hochstrasser
Journal:  Opt Lett       Date:  2000-08-15       Impact factor: 3.776

4.  Unusual temperature dependence of photosynthetic electron transfer due to protein dynamics.

Authors:  Haiyu Wang; Su Lin; Evaldas Katilius; Christa Laser; James P Allen; Joann C Williams; Neal W Woodbury
Journal:  J Phys Chem B       Date:  2009-01-22       Impact factor: 2.991

5.  Tracking the structural dynamics of proteins in solution using time-resolved wide-angle X-ray scattering.

Authors:  Marco Cammarata; Matteo Levantino; Friedrich Schotte; Philip A Anfinrud; Friederike Ewald; Jungkweon Choi; Antonio Cupane; Michael Wulff; Hyotcherl Ihee
Journal:  Nat Methods       Date:  2008-09-21       Impact factor: 28.547

6.  Low frequency vibrational modes in proteins: changes induced by point-mutations in the protein-cofactor matrix of bacterial reaction centers.

Authors:  C Rischel; D Spiedel; J P Ridge; M R Jones; J Breton; J C Lambry; J L Martin; M H Vos
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

7.  Protein states and proteinquakes.

Authors:  A Ansari; J Berendzen; S F Bowne; H Frauenfelder; I E Iben; T B Sauke; E Shyamsunder; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

8.  Picosecond calorimetry: time-resolved x-ray diffraction studies of liquid CH2Cl2.

Authors:  Panayiotis Georgiou; Jonathan Vincent; Magnus Andersson; Annemarie B Wöhri; Pontus Gourdon; Jens Poulsen; Jan Davidsson; Richard Neutze
Journal:  J Chem Phys       Date:  2006-06-21       Impact factor: 3.488

9.  Effect of detergent concentration on the thermal stability of a membrane protein: The case study of bacterial reaction center solubilized by N,N-dimethyldodecylamine-N-oxide.

Authors:  Gerardo Palazzo; Francesco Lopez; Antonia Mallardi
Journal:  Biochim Biophys Acta       Date:  2009-09-26

10.  Signal amplification and transduction in phytochrome photosensors.

Authors:  Heikki Takala; Alexander Björling; Oskar Berntsson; Heli Lehtivuori; Stephan Niebling; Maria Hoernke; Irina Kosheleva; Robert Henning; Andreas Menzel; Janne A Ihalainen; Sebastian Westenhoff
Journal:  Nature       Date:  2014-04-30       Impact factor: 49.962

View more
  65 in total

Review 1.  A Bright Future for Serial Femtosecond Crystallography with XFELs.

Authors:  Linda C Johansson; Benjamin Stauch; Andrii Ishchenko; Vadim Cherezov
Journal:  Trends Biochem Sci       Date:  2017-07-18       Impact factor: 13.807

Review 2.  Emerging applications of small angle solution scattering in structural biology.

Authors:  Barnali N Chaudhuri
Journal:  Protein Sci       Date:  2015-02-12       Impact factor: 6.725

3.  The author file: Richard Neutze.

Authors:  Vivien Marx
Journal:  Nat Methods       Date:  2014-09       Impact factor: 28.547

4.  Direct observation of bond formation in solution with femtosecond X-ray scattering.

Authors:  Kyung Hwan Kim; Jong Goo Kim; Shunsuke Nozawa; Tokushi Sato; Key Young Oang; Tae Wu Kim; Hosung Ki; Junbeom Jo; Sungjun Park; Changyong Song; Takahiro Sato; Kanade Ogawa; Tadashi Togashi; Kensuke Tono; Makina Yabashi; Tetsuya Ishikawa; Joonghan Kim; Ryong Ryoo; Jeongho Kim; Hyotcherl Ihee; Shin-ichi Adachi
Journal:  Nature       Date:  2015-02-19       Impact factor: 49.962

5.  Recording and Analyzing Nucleic Acid Distance Distributions with X-Ray Scattering Interferometry (XSI).

Authors:  Thomas Zettl; Rhiju Das; Pehr A B Harbury; Daniel Herschlag; Jan Lipfert; Rebecca S Mathew; Xuesong Shi
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2018-06-07

6.  Structural biology: 'seeing' crystals the XFEL way.

Authors:  Vivien Marx
Journal:  Nat Methods       Date:  2014-09       Impact factor: 28.547

7.  Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein.

Authors:  Kanupriya Pande; Christopher D M Hutchison; Gerrit Groenhof; Andy Aquila; Josef S Robinson; Jason Tenboer; Shibom Basu; Sébastien Boutet; Daniel P DePonte; Mengning Liang; Thomas A White; Nadia A Zatsepin; Oleksandr Yefanov; Dmitry Morozov; Dominik Oberthuer; Cornelius Gati; Ganesh Subramanian; Daniel James; Yun Zhao; Jake Koralek; Jennifer Brayshaw; Christopher Kupitz; Chelsie Conrad; Shatabdi Roy-Chowdhury; Jesse D Coe; Markus Metz; Paulraj Lourdu Xavier; Thomas D Grant; Jason E Koglin; Gihan Ketawala; Raimund Fromme; Vukica Šrajer; Robert Henning; John C H Spence; Abbas Ourmazd; Peter Schwander; Uwe Weierstall; Matthias Frank; Petra Fromme; Anton Barty; Henry N Chapman; Keith Moffat; Jasper J van Thor; Marius Schmidt
Journal:  Science       Date:  2016-05-05       Impact factor: 47.728

Review 8.  Atomic resolution structure determination by the cryo-EM method MicroED.

Authors:  Shian Liu; Johan Hattne; Francis E Reyes; Silvia Sanchez-Martinez; M Jason de la Cruz; Dan Shi; Tamir Gonen
Journal:  Protein Sci       Date:  2016-08-19       Impact factor: 6.725

9.  Ultrafast anisotropic protein quake propagation after CO photodissociation in myoglobin.

Authors:  Levin U L Brinkmann; Jochen S Hub
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-06       Impact factor: 11.205

10.  Molecular Hyperthermia: Spatiotemporal Protein Unfolding and Inactivation by Nanosecond Plasmonic Heating.

Authors:  Peiyuan Kang; Zhuo Chen; Steven O Nielsen; Kenneth Hoyt; Sheena D'Arcy; Jeremiah J Gassensmith; Zhenpeng Qin
Journal:  Small       Date:  2017-07-11       Impact factor: 13.281

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.