Literature DB >> 25516491

Emerging applications of small angle solution scattering in structural biology.

Barnali N Chaudhuri1.   

Abstract

Small angle solution X-ray and neutron scattering recently resurfaced as powerful tools to address an array of biological problems including folding, intrinsic disorder, conformational transitions, macromolecular crowding, and self or hetero-assembling of biomacromolecules. In addition, small angle solution scattering complements crystallography, nuclear magnetic resonance spectroscopy, and other structural methods to aid in the structure determinations of multidomain or multicomponent proteins or nucleoprotein assemblies. Neutron scattering with hydrogen/deuterium contrast variation, or X-ray scattering with sucrose contrast variation to a certain extent, is a convenient tool for characterizing the organizations of two-component systems such as a nucleoprotein or a lipid-protein assembly. Time-resolved small and wide-angle solution scattering to study biological processes in real time, and the use of localized heavy-atom labeling and anomalous solution scattering for applications as FRET-like molecular rulers, are amongst promising newer developments. Despite the challenges in data analysis and interpretation, these X-ray/neutron solution scattering based approaches hold great promise for understanding a wide variety of complex processes prevalent in the biological milieu.
© 2014 The Protein Society.

Entities:  

Keywords:  anomalous solution scattering; small angle X-ray scattering; solution neutron scattering; solution structure determination

Mesh:

Substances:

Year:  2015        PMID: 25516491      PMCID: PMC4353354          DOI: 10.1002/pro.2624

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  137 in total

1.  Cooperative reorganization of a 420 subunit virus capsid.

Authors:  Kelly K Lee; Hiro Tsuruta; Roger W Hendrix; Robert L Duda; John E Johnson
Journal:  J Mol Biol       Date:  2005-09-23       Impact factor: 5.469

2.  Small-angle X-ray scattering from RNA, proteins, and protein complexes.

Authors:  Jan Lipfert; Sebastian Doniach
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007

3.  Three-dimensional single-particle imaging using angular correlations from X-ray laser data.

Authors:  Haiguang Liu; Billy K Poon; Dilano K Saldin; John C H Spence; Peter H Zwart
Journal:  Acta Crystallogr A       Date:  2013-05-08       Impact factor: 2.290

4.  Synaptic arrangement of the neuroligin/beta-neurexin complex revealed by X-ray and neutron scattering.

Authors:  Davide Comoletti; Alexander Grishaev; Andrew E Whitten; Igor Tsigelny; Palmer Taylor; Jill Trewhella
Journal:  Structure       Date:  2007-06       Impact factor: 5.006

5.  Combining NMR and small angle X-ray and neutron scattering in the structural analysis of a ternary protein-RNA complex.

Authors:  Janosch Hennig; Iren Wang; Miriam Sonntag; Frank Gabel; Michael Sattler
Journal:  J Biomol NMR       Date:  2013-03-03       Impact factor: 2.835

6.  The structure of the KinA-Sda complex suggests an allosteric mechanism of histidine kinase inhibition.

Authors:  Andrew E Whitten; David A Jacques; Boualem Hammouda; Tracey Hanley; Glenn F King; J Mitchell Guss; Jill Trewhella; David B Langley
Journal:  J Mol Biol       Date:  2007-02-03       Impact factor: 5.469

7.  FoXS: a web server for rapid computation and fitting of SAXS profiles.

Authors:  Dina Schneidman-Duhovny; Michal Hammel; Andrej Sali
Journal:  Nucleic Acids Res       Date:  2010-05-27       Impact factor: 16.971

8.  Cortactin adopts a globular conformation and bundles actin into sheets.

Authors:  Nathan P Cowieson; Gordon King; David Cookson; Ian Ross; Thomas Huber; David A Hume; Bostjan Kobe; Jennifer L Martin
Journal:  J Biol Chem       Date:  2008-03-27       Impact factor: 5.157

9.  Sub-millisecond time-resolved SAXS using a continuous-flow mixer and X-ray microbeam.

Authors:  Rita Graceffa; R Paul Nobrega; Raul A Barrea; Sagar V Kathuria; Srinivas Chakravarthy; Osman Bilsel; Thomas C Irving
Journal:  J Synchrotron Radiat       Date:  2013-10-01       Impact factor: 2.616

10.  Wildtype and A30P mutant alpha-synuclein form different fibril structures.

Authors:  Søren Bang Nielsen; Francesca Macchi; Samuele Raccosta; Annette Eva Langkilde; Lise Giehm; Anders Kyrsting; Anna Sigrid Pii Svane; Mauro Manno; Gunna Christiansen; Niels Christian Nielsen; Lene Oddershede; Bente Vestergaard; Daniel Erik Otzen
Journal:  PLoS One       Date:  2013-07-04       Impact factor: 3.240

View more
  12 in total

1.  Architectural Features of Human Mitochondrial Cysteine Desulfurase Complexes from Crosslinking Mass Spectrometry and Small-Angle X-Ray Scattering.

Authors:  Kai Cai; Ronnie O Frederick; Hesam Dashti; John L Markley
Journal:  Structure       Date:  2018-07-05       Impact factor: 5.006

2.  Protein-DNA and ion-DNA interactions revealed through contrast variation SAXS.

Authors:  Joshua M Tokuda; Suzette A Pabit; Lois Pollack
Journal:  Biophys Rev       Date:  2016-06

3.  Interaction among bovine serum albumin (BSA) molecules in the presence of anions: a small-angle neutron scattering study.

Authors:  Subhankar Pandit; Sarathi Kundu; Vinod K Aswal
Journal:  J Biol Phys       Date:  2022-04-13       Impact factor: 1.560

4.  Apurinic/apyrimidinic (AP) endonuclease 1 processing of AP sites with 5' mismatches.

Authors:  Max S Fairlamb; Amy M Whitaker; Bret D Freudenthal
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-07-24       Impact factor: 7.652

Review 5.  Methods for Physical Characterization of Phase-Separated Bodies and Membrane-less Organelles.

Authors:  Diana M Mitrea; Bappaditya Chandra; Mylene C Ferrolino; Eric B Gibbs; Michele Tolbert; Michael R White; Richard W Kriwacki
Journal:  J Mol Biol       Date:  2018-07-24       Impact factor: 5.469

Review 6.  SAXS studies of RNA: structures, dynamics, and interactions with partners.

Authors:  Yujie Chen; Lois Pollack
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-04-12       Impact factor: 9.957

7.  Role of Phosphorylation in Moesin Interactions with PIP2-Containing Biomimetic Membranes.

Authors:  Quentin Lubart; Helene Vitet; Fabien Dalonneau; Aline Le Roy; Mathieu Kowalski; Morgane Lourdin; Christine Ebel; Marianne Weidenhaupt; Catherine Picart
Journal:  Biophys J       Date:  2018-01-09       Impact factor: 4.033

8.  A method for efficient Bayesian optimization of self-assembly systems from scattering data.

Authors:  Marcus Thomas; Russell Schwartz
Journal:  BMC Syst Biol       Date:  2018-06-08

9.  Refining internal bilayer structure of bicelles resolved by extended-q small angle X-ray scattering.

Authors:  Catherine Cheu; Lin Yang; Mu-Ping Nieh
Journal:  Chem Phys Lipids       Date:  2020-07-01       Impact factor: 3.329

10.  BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis.

Authors:  Jesse Bennett Hopkins; Richard E Gillilan; Soren Skou
Journal:  J Appl Crystallogr       Date:  2017-09-05       Impact factor: 3.304

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.