Literature DB >> 25693570

Direct observation of bond formation in solution with femtosecond X-ray scattering.

Kyung Hwan Kim1, Jong Goo Kim1, Shunsuke Nozawa2, Tokushi Sato2, Key Young Oang1, Tae Wu Kim1, Hosung Ki1, Junbeom Jo1, Sungjun Park1, Changyong Song3, Takahiro Sato3, Kanade Ogawa3, Tadashi Togashi4, Kensuke Tono4, Makina Yabashi3, Tetsuya Ishikawa3, Joonghan Kim5, Ryong Ryoo1, Jeongho Kim6, Hyotcherl Ihee1, Shin-ichi Adachi7.   

Abstract

The making and breaking of atomic bonds are essential processes in chemical reactions. Although the ultrafast dynamics of bond breaking have been studied intensively using time-resolved techniques, it is very difficult to study the structural dynamics of bond making, mainly because of its bimolecular nature. It is especially difficult to initiate and follow diffusion-limited bond formation in solution with ultrahigh time resolution. Here we use femtosecond time-resolved X-ray solution scattering to visualize the formation of a gold trimer complex, [Au(CN)2(-)]3 in real time without the limitation imposed by slow diffusion. This photoexcited gold trimer, which has weakly bound gold atoms in the ground state, undergoes a sequence of structural changes, and our experiments probe the dynamics of individual reaction steps, including covalent bond formation, the bent-to-linear transition, bond contraction and tetramer formation with a time resolution of ∼500 femtoseconds. We also determined the three-dimensional structures of reaction intermediates with sub-ångström spatial resolution. This work demonstrates that it is possible to track in detail and in real time the structural changes that occur during a chemical reaction in solution using X-ray free-electron lasers and advanced analysis of time-resolved solution scattering data.

Year:  2015        PMID: 25693570     DOI: 10.1038/nature14163

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  28 in total

1.  Femtosecond X-ray measurement of coherent lattice vibrations near the Lindemann stability limit.

Authors:  Klaus Sokolowski-Tinten; Christian Blome; Juris Blums; Andrea Cavalleri; Clemens Dietrich; Alexander Tarasevitch; Ingo Uschmann; Eckhard Förster; Martin Kammler; Michael Horn-von-Hoegen; Dietrich von der Linde
Journal:  Nature       Date:  2003-03-20       Impact factor: 49.962

2.  Theoretical chemistry of gold.

Authors:  Pekka Pyykkö
Journal:  Angew Chem Int Ed Engl       Date:  2004-08-27       Impact factor: 15.336

3.  Laser femtochemistry.

Authors:  A H Zewail
Journal:  Science       Date:  1988-12-23       Impact factor: 47.728

4.  Photoinduced gold(I)-gold(I) chemical bonding in dicyanoaurate oligomers.

Authors:  Ganglong Cui; Xiao-Yan Cao; Wei-Hai Fang; Michael Dolg; Walter Thiel
Journal:  Angew Chem Int Ed Engl       Date:  2013-08-12       Impact factor: 15.336

5.  Spatiotemporal kinetics in solution studied by time-resolved X-ray liquidography (solution scattering).

Authors:  Tae Kyu Kim; Jae Hyuk Lee; Michael Wulff; Qingyu Kong; Hyotcherl Ihee
Journal:  Chemphyschem       Date:  2009-08-24       Impact factor: 3.102

6.  Ultrafast photochemistry in liquids.

Authors:  Arnulf Rosspeintner; Bernhard Lang; Eric Vauthey
Journal:  Annu Rev Phys Chem       Date:  2013-01-04       Impact factor: 12.703

Review 7.  Mapping atomic motions with ultrabright electrons: the chemists' gedanken experiment enters the lab frame.

Authors:  R J Dwayne Miller
Journal:  Annu Rev Phys Chem       Date:  2014-01-09       Impact factor: 12.703

8.  Excited-state interactions for [Au(CN)(2)(-)](n) and [Ag(CN)(2)(-)](n) oligomers in solution. Formation of luminescent gold-gold bonded excimers and exciplexes.

Authors:  M A Rawashdeh-Omary; M A Omary; H H Patterson; J P Fackler
Journal:  J Am Chem Soc       Date:  2001-11-14       Impact factor: 15.419

9.  Visualizing a protein quake with time-resolved X-ray scattering at a free-electron laser.

Authors:  David Arnlund; Linda C Johansson; Cecilia Wickstrand; Anton Barty; Garth J Williams; Erik Malmerberg; Jan Davidsson; Despina Milathianaki; Daniel P DePonte; Robert L Shoeman; Dingjie Wang; Daniel James; Gergely Katona; Sebastian Westenhoff; Thomas A White; Andrew Aquila; Sadia Bari; Peter Berntsen; Mike Bogan; Tim Brandt van Driel; R Bruce Doak; Kasper Skov Kjær; Matthias Frank; Raimund Fromme; Ingo Grotjohann; Robert Henning; Mark S Hunter; Richard A Kirian; Irina Kosheleva; Christopher Kupitz; Mengning Liang; Andrew V Martin; Martin Meedom Nielsen; Marc Messerschmidt; M Marvin Seibert; Jennie Sjöhamn; Francesco Stellato; Uwe Weierstall; Nadia A Zatsepin; John C H Spence; Petra Fromme; Ilme Schlichting; Sébastien Boutet; Gerrit Groenhof; Henry N Chapman; Richard Neutze
Journal:  Nat Methods       Date:  2014-08-10       Impact factor: 28.547

10.  Visualizing solution-phase reaction dynamics with time-resolved X-ray liquidography.

Authors:  Hyotcherl Ihee
Journal:  Acc Chem Res       Date:  2009-02-17       Impact factor: 22.384

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  40 in total

1.  Novel Techniques for Observing Structural Dynamics of Photoresponsive Liquid Crystals.

Authors:  Masaki Hada; Shohei Saito; Ryuma Sato; Kiyoshi Miyata; Yasuhiko Hayashi; Yasuteru Shigeta; Ken Onda
Journal:  J Vis Exp       Date:  2018-05-29       Impact factor: 1.355

2.  Protein structural dynamics revealed by time-resolved X-ray solution scattering.

Authors:  Jong Goo Kim; Tae Wu Kim; Jeongho Kim; Hyotcherl Ihee
Journal:  Acc Chem Res       Date:  2015-07-02       Impact factor: 22.384

3.  Combined probes of X-ray scattering and optical spectroscopy reveal how global conformational change is temporally and spatially linked to local structural perturbation in photoactive yellow protein.

Authors:  Tae Wu Kim; Cheolhee Yang; Youngmin Kim; Jong Goo Kim; Jeongho Kim; Yang Ouk Jung; Sunhong Jun; Sang Jin Lee; Sungjun Park; Irina Kosheleva; Robert Henning; Jasper J van Thor; Hyotcherl Ihee
Journal:  Phys Chem Chem Phys       Date:  2016-04-07       Impact factor: 3.676

Review 4.  Why Proteins are Big: Length Scale Effects on Equilibria and Kinetics.

Authors:  Kenneth A Rubinson
Journal:  Protein J       Date:  2019-04       Impact factor: 2.371

5.  Direct observation of ultrafast hydrogen bond strengthening in liquid water.

Authors:  Jie Yang; Riccardo Dettori; J Pedro F Nunes; Nanna H List; Elisa Biasin; Martin Centurion; Zhijiang Chen; Amy A Cordones; Daniel P Deponte; Tony F Heinz; Michael E Kozina; Kathryn Ledbetter; Ming-Fu Lin; Aaron M Lindenberg; Mianzhen Mo; Anders Nilsson; Xiaozhe Shen; Thomas J A Wolf; Davide Donadio; Kelly J Gaffney; Todd J Martinez; Xijie Wang
Journal:  Nature       Date:  2021-08-25       Impact factor: 49.962

Review 6.  Reaction dynamics studied via femtosecond X-ray liquidography at X-ray free-electron lasers.

Authors:  Eun Hyuk Choi; Yunbeom Lee; Jun Heo; Hyotcherl Ihee
Journal:  Chem Sci       Date:  2022-06-06       Impact factor: 9.969

7.  Ultrafast Excited State Relaxation of a Metalloporphyrin Revealed by Femtosecond X-ray Absorption Spectroscopy.

Authors:  Megan L Shelby; Patrick J Lestrange; Nicholas E Jackson; Kristoffer Haldrup; Michael W Mara; Andrew B Stickrath; Diling Zhu; Henrik T Lemke; Matthieu Chollet; Brian M Hoffman; Xiaosong Li; Lin X Chen
Journal:  J Am Chem Soc       Date:  2016-07-06       Impact factor: 15.419

8.  Direct observation of coherent femtosecond solvent reorganization coupled to intramolecular electron transfer.

Authors:  Elisa Biasin; Zachary W Fox; Amity Andersen; Kathryn Ledbetter; Kasper S Kjær; Roberto Alonso-Mori; Julia M Carlstad; Matthieu Chollet; James D Gaynor; James M Glownia; Kiryong Hong; Thomas Kroll; Jae Hyuk Lee; Chelsea Liekhus-Schmaltz; Marco Reinhard; Dimosthenis Sokaras; Yu Zhang; Gilles Doumy; Anne Marie March; Stephen H Southworth; Shaul Mukamel; Kelly J Gaffney; Robert W Schoenlein; Niranjan Govind; Amy A Cordones; Munira Khalil
Journal:  Nat Chem       Date:  2021-02-15       Impact factor: 24.427

9.  Ultrafast structural dynamics of in-cage isomerization of diiodomethane in solution.

Authors:  Hanui Kim; Jong Goo Kim; Tae Wu Kim; Sang Jin Lee; Shunsuke Nozawa; Shin-Ichi Adachi; Kihwan Yoon; Joonghan Kim; Hyotcherl Ihee
Journal:  Chem Sci       Date:  2020-12-07       Impact factor: 9.825

10.  Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering.

Authors:  Yunbeom Lee; Jong Goo Kim; Sang Jin Lee; Srinivasan Muniyappan; Tae Wu Kim; Hosung Ki; Hanui Kim; Junbeom Jo; So Ri Yun; Hyosub Lee; Kyung Won Lee; Seong Ok Kim; Marco Cammarata; Hyotcherl Ihee
Journal:  Nat Commun       Date:  2021-06-16       Impact factor: 14.919

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