Literature DB >> 27452773

Atomic resolution structure determination by the cryo-EM method MicroED.

Shian Liu1, Johan Hattne1, Francis E Reyes1, Silvia Sanchez-Martinez1, M Jason de la Cruz1, Dan Shi1, Tamir Gonen1.   

Abstract

The electron cryo-microscopy (cryoEM) method MicroED has been rapidly developing. In this review we highlight some of the key steps in MicroED from crystal analysis to structure determination. We compare and contrast MicroED and the latest X-ray based diffraction method the X-ray free-electron laser (XFEL). Strengths and shortcomings of both MicroED and XFEL are discussed. Finally, all current MicroED structures are tabulated with a view to the future.
© 2016 The Protein Society.

Keywords:  MicroED; cryo EM; crystallography; nano crystals

Mesh：

Year:  2016        PMID： 27452773      PMCID： PMC5192978          DOI： 10.1002/pro.2989

Source DB:  PubMed          Journal:  Protein Sci        ISSN： 0961-8368            Impact factor:   6.725


  45 in total

1.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

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Authors:  Karol Nass; Lutz Foucar; Thomas R M Barends; Elisabeth Hartmann; Sabine Botha; Robert L Shoeman; R Bruce Doak; Roberto Alonso-Mori; Andrew Aquila; Saša Bajt; Anton Barty; Richard Bean; Kenneth R Beyerlein; Maike Bublitz; Nikolaj Drachmann; Jonas Gregersen; H Olof Jönsson; Wolfgang Kabsch; Stephan Kassemeyer; Jason E Koglin; Michael Krumrey; Daniel Mattle; Marc Messerschmidt; Poul Nissen; Linda Reinhard; Oleg Sitsel; Dimosthenis Sokaras; Garth J Williams; Stefan Hau-Riege; Nicusor Timneanu; Carl Caleman; Henry N Chapman; Sébastien Boutet; Ilme Schlichting
Journal:  J Synchrotron Radiat       Date:  2015-02-17       Impact factor: 2.616

3.  Electron crystallography of ultrathin 3D protein crystals: atomic model with charges.

Authors:  Koji Yonekura; Kazuyuki Kato; Mitsuo Ogasawara; Masahiro Tomita; Chikashi Toyoshima
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-17       Impact factor: 11.205

4.  Femtosecond protein nanocrystallography-data analysis methods.

Authors:  Richard A Kirian; Xiaoyu Wang; Uwe Weierstall; Kevin E Schmidt; John C H Spence; Mark Hunter; Petra Fromme; Thomas White; Henry N Chapman; James Holton
Journal:  Opt Express       Date:  2010-03-15       Impact factor: 3.894

5.  Solving protein nanocrystals by cryo-EM diffraction: multiple scattering artifacts.

Authors:  Ganesh Subramanian; Shibom Basu; Haiguang Liu; Jian-Min Zuo; John C H Spence
Journal:  Ultramicroscopy       Date:  2014-10-06       Impact factor: 2.689

6.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

7.  Visualizing a protein quake with time-resolved X-ray scattering at a free-electron laser.

Authors:  David Arnlund; Linda C Johansson; Cecilia Wickstrand; Anton Barty; Garth J Williams; Erik Malmerberg; Jan Davidsson; Despina Milathianaki; Daniel P DePonte; Robert L Shoeman; Dingjie Wang; Daniel James; Gergely Katona; Sebastian Westenhoff; Thomas A White; Andrew Aquila; Sadia Bari; Peter Berntsen; Mike Bogan; Tim Brandt van Driel; R Bruce Doak; Kasper Skov Kjær; Matthias Frank; Raimund Fromme; Ingo Grotjohann; Robert Henning; Mark S Hunter; Richard A Kirian; Irina Kosheleva; Christopher Kupitz; Mengning Liang; Andrew V Martin; Martin Meedom Nielsen; Marc Messerschmidt; M Marvin Seibert; Jennie Sjöhamn; Francesco Stellato; Uwe Weierstall; Nadia A Zatsepin; John C H Spence; Petra Fromme; Ilme Schlichting; Sébastien Boutet; Gerrit Groenhof; Henry N Chapman; Richard Neutze
Journal:  Nat Methods       Date:  2014-08-10       Impact factor: 28.547

8.  Structural basis for bifunctional peptide recognition at human δ-opioid receptor.

Authors:  Gustavo Fenalti; Nadia A Zatsepin; Cecilia Betti; Patrick Giguere; Gye Won Han; Andrii Ishchenko; Wei Liu; Karel Guillemyn; Haitao Zhang; Daniel James; Dingjie Wang; Uwe Weierstall; John C H Spence; Sébastien Boutet; Marc Messerschmidt; Garth J Williams; Cornelius Gati; Oleksandr M Yefanov; Thomas A White; Dominik Oberthuer; Markus Metz; Chun Hong Yoon; Anton Barty; Henry N Chapman; Shibom Basu; Jesse Coe; Chelsie E Conrad; Raimund Fromme; Petra Fromme; Dirk Tourwé; Peter W Schiller; Bryan L Roth; Steven Ballet; Vsevolod Katritch; Raymond C Stevens; Vadim Cherezov
Journal:  Nat Struct Mol Biol       Date:  2015-02-16       Impact factor: 15.369

9.  Structure of a photosynthetic reaction centre determined by serial femtosecond crystallography.

Authors:  Linda C Johansson; David Arnlund; Gergely Katona; Thomas A White; Anton Barty; Daniel P DePonte; Robert L Shoeman; Cecilia Wickstrand; Amit Sharma; Garth J Williams; Andrew Aquila; Michael J Bogan; Carl Caleman; Jan Davidsson; R Bruce Doak; Matthias Frank; Raimund Fromme; Lorenzo Galli; Ingo Grotjohann; Mark S Hunter; Stephan Kassemeyer; Richard A Kirian; Christopher Kupitz; Mengning Liang; Lukas Lomb; Erik Malmerberg; Andrew V Martin; Marc Messerschmidt; Karol Nass; Lars Redecke; M Marvin Seibert; Jennie Sjöhamn; Jan Steinbrener; Francesco Stellato; Dingjie Wang; Weixaio Y Wahlgren; Uwe Weierstall; Sebastian Westenhoff; Nadia A Zatsepin; Sébastien Boutet; John C H Spence; Ilme Schlichting; Henry N Chapman; Petra Fromme; Richard Neutze
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

Review 10.  Cryo-electron tomography: the challenge of doing structural biology in situ.

Authors:  Vladan Lučič; Alexander Rigort; Wolfgang Baumeister
Journal:  J Cell Biol       Date:  2013-08-05       Impact factor: 10.539
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  5 in total

Review 1.  Understanding pre-mRNA splicing through crystallography.

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Journal:  Methods       Date:  2017-05-12       Impact factor: 3.608

2.  Common fibrillar spines of amyloid-β and human islet amyloid polypeptide revealed by microelectron diffraction and structure-based inhibitors.

Authors:  Pascal Krotee; Sarah L Griner; Michael R Sawaya; Duilio Cascio; Jose A Rodriguez; Dan Shi; Stephan Philipp; Kevin Murray; Lorena Saelices; Ji Lee; Paul Seidler; Charles G Glabe; Lin Jiang; Tamir Gonen; David S Eisenberg
Journal:  J Biol Chem       Date:  2017-12-27       Impact factor: 5.157

3.  Atomic-level evidence for packing and positional amyloid polymorphism by segment from TDP-43 RRM2.

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4.  Atomic structures of fibrillar segments of hIAPP suggest tightly mated β-sheets are important for cytotoxicity.

Authors:  Pascal Krotee; Jose A Rodriguez; Michael R Sawaya; Duilio Cascio; Francis E Reyes; Dan Shi; Johan Hattne; Brent L Nannenga; Marie E Oskarsson; Stephan Philipp; Sarah Griner; Lin Jiang; Charles G Glabe; Gunilla T Westermark; Tamir Gonen; David S Eisenberg
Journal:  Elife       Date:  2017-01-03       Impact factor: 8.140

5.  MicroED: a versatile cryoEM method for structure determination.

Authors:  Brent L Nannenga; Tamir Gonen
Journal:  Emerg Top Life Sci       Date:  2018-02-06
  5 in total

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