Literature DB >> 25079425

In-cell ¹³C NMR spectroscopy for the study of intrinsically disordered proteins.

Isabella C Felli1, Leonardo Gonnelli1, Roberta Pierattelli1.   

Abstract

A large number of proteins carry out their function in highly flexible and disordered states, lacking a well-defined 3D structure. These proteins, referred to as intrinsically disordered proteins (IDPs), are now in the spotlight of modern structural biology. Nuclear magnetic resonance (NMR) spectroscopy represents a unique tool for accessing atomic resolution information on IDPs in complex environments as whole cells, provided that the methods are optimized to their peculiar properties and to the characteristics of in-cell experiments. We describe procedures for the preparation of in-cell NMR samples, as well as for the setup of NMR experiments and their application to in-cell studies, using human α-synuclein overexpressed in Escherichia coli as an example. The expressed protein is labeled with (13)C and (15)N stable isotopes to enable the direct recording of (13)C-detected NMR experiments optimized for the properties of IDPs. The entire procedure covers 24 h, including cell transformation, cell growth overnight, setup of the spectrometer and NMR experiment recording.

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Year:  2014        PMID: 25079425     DOI: 10.1038/nprot.2014.124

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  53 in total

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Review 2.  Nuclear magnetic resonance methods for elucidation of structure and dynamics in disordered states.

Authors:  H J Dyson; P E Wright
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

Review 3.  Disordered proteins studied by chemical shifts.

Authors:  Magnus Kjaergaard; Flemming M Poulsen
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2011-10-12       Impact factor: 9.795

Review 4.  Atomic-level characterization of disordered protein ensembles.

Authors:  Tanja Mittag; Julie D Forman-Kay
Journal:  Curr Opin Struct Biol       Date:  2007-01-23       Impact factor: 6.809

Review 5.  Recent progress in NMR spectroscopy: toward the study of intrinsically disordered proteins of increasing size and complexity.

Authors:  Isabella C Felli; Roberta Pierattelli
Journal:  IUBMB Life       Date:  2012-05-04       Impact factor: 3.885

6.  Studying posttranslational modifications by in-cell NMR.

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7.  Cell signaling, post-translational protein modifications and NMR spectroscopy.

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8.  Practical protocols for production of very high yields of recombinant proteins using Escherichia coli.

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9.  Protein nuclear magnetic resonance under physiological conditions.

Authors:  Gary J Pielak; Conggang Li; Andrew C Miklos; Alexander P Schlesinger; Kristin M Slade; Gui-Fang Wang; Imola G Zigoneanu
Journal:  Biochemistry       Date:  2009-01-20       Impact factor: 3.162

10.  13C direct detection experiments on the paramagnetic oxidized monomeric copper, zinc superoxide dismutase.

Authors:  Wolfgang Bermel; Ivano Bertini; Isabella C Felli; Rainer Kümmerle; Roberta Pierattelli
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  16 in total

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Authors:  Marco Schiavina; Maria Grazia Murrali; Letizia Pontoriero; Valerio Sainati; Rainer Kümmerle; Wolfgang Bermel; Roberta Pierattelli; Isabella C Felli
Journal:  Biophys J       Date:  2019-05-23       Impact factor: 4.033

Review 3.  Interaction proteomics by using in-cell NMR spectroscopy.

Authors:  Leonard Breindel; David S Burz; Alexander Shekhtman
Journal:  J Proteomics       Date:  2018-02-08       Impact factor: 4.044

4.  Improved sensitivity and resolution of in-cell NMR spectra.

Authors:  David S Burz; Leonard Breindel; Alexander Shekhtman
Journal:  Methods Enzymol       Date:  2019-03-13       Impact factor: 1.600

Review 5.  Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins.

Authors:  Haribabu Arthanari; Koh Takeuchi; Abhinav Dubey; Gerhard Wagner
Journal:  Curr Opin Struct Biol       Date:  2019-07-19       Impact factor: 6.809

Review 6.  NMR of Macromolecular Assemblies and Machines at 1 GHz and Beyond: New Transformative Opportunities for Molecular Structural Biology.

Authors:  Caitlin M Quinn; Mingzhang Wang; Tatyana Polenova
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Review 7.  13C Direct Detected NMR for Challenging Systems.

Authors:  Isabella C Felli; Roberta Pierattelli
Journal:  Chem Rev       Date:  2022-01-13       Impact factor: 72.087

Review 8.  Radio Signals from Live Cells: The Coming of Age of In-Cell Solution NMR.

Authors:  Enrico Luchinat; Matteo Cremonini; Lucia Banci
Journal:  Chem Rev       Date:  2022-01-21       Impact factor: 72.087

9.  Structural basis of synaptic vesicle assembly promoted by α-synuclein.

Authors:  Giuliana Fusco; Tillmann Pape; Amberley D Stephens; Pierre Mahou; Ana Rita Costa; Clemens F Kaminski; Gabriele S Kaminski Schierle; Michele Vendruscolo; Gianluigi Veglia; Christopher M Dobson; Alfonso De Simone
Journal:  Nat Commun       Date:  2016-09-19       Impact factor: 14.919

10.  Detection of methylation, acetylation and glycosylation of protein residues by monitoring (13)C chemical-shift changes: A quantum-chemical study.

Authors:  Pablo G Garay; Osvaldo A Martin; Harold A Scheraga; Jorge A Vila
Journal:  PeerJ       Date:  2016-07-21       Impact factor: 2.984

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